Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 3.3e-218 761.5 420 100.0
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.0e-110 404.4 409 56.7
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 3.3e-109 399.4 410 56.1
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 9.7e-109 397.9 408 55.1
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 1.8e-107 393.7 405 56.0
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 7.7e-106 388.3 406 55.2
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 5.5e-104 382.1 415 54.7
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 7.2e-104 381.7 406 54.2
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 1.1e-101 374.4 416 54.6
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 1.4e-96 357.5 406 50.2
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 7.2e-96 355.1 382 53.1
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 2.0e-93 347.1 407 49.6
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 3.3e-93 346.3 379 55.4
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 1.3e-92 344.4 407 52.3
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 2.6e-90 336.7 413 50.1
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 1.3e-89 334.3 406 49.5
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.7e-89 334.0 408 49.3
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 2.1e-87 327.0 396 49.7
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 2.1e-87 327.0 396 50.0
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 8.0e-87 325.1 408 49.8
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 1.0e-86 324.7 410 49.8
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 1.4e-86 324.3 415 48.2
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 1.8e-86 323.9 415 48.7
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 4.0e-86 322.8 424 47.9
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 8.8e-86 321.6 408 48.8
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 1.5e-85 320.9 411 48.4
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 2.0e-85 320.5 404 47.5
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 2.6e-85 320.1 387 49.9
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.3e-85 319.7 405 48.9
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 9.7e-85 318.2 420 47.1
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 1.7e-84 317.4 409 47.4
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.7e-84 317.4 408 48.3
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 2.2e-84 317.0 379 50.4
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 3.1e-83 313.2 404 48.8
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 4.1e-83 312.8 397 48.6
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 5.3e-83 312.4 421 45.8
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 2.0e-82 310.5 391 47.8
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 2.0e-82 310.5 402 47.8
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 5.0e-81 305.8 405 48.1
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 2.5e-80 303.5 406 49.5
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 5.5e-80 302.4 411 47.7
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 1.2e-79 301.2 421 46.6
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 1.2e-79 301.2 399 47.4
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 6.1e-79 298.9 344 52.6
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 8.0e-79 298.5 408 46.6
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 1.4e-78 297.7 441 44.7
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 4.0e-78 296.2 401 47.1
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 4.0e-78 296.2 395 47.6
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 1.2e-77 294.7 418 45.5
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.4e-77 293.1 413 46.2
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 3.4e-77 293.1 392 47.4
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 4.8e-76 289.3 456 42.8
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.8e-75 287.3 380 46.6
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 4.1e-75 286.2 421 43.9
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 1.6e-74 284.3 385 44.2
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 2.7e-74 283.5 427 45.4
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 1.7e-73 280.8 424 44.6
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 2.3e-73 280.4 396 43.9
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 8.6e-73 278.5 409 44.5
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 1.1e-72 278.1 469 40.7
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 1.5e-72 277.7 406 45.1
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 2.5e-72 276.9 417 44.6
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 2.5e-72 276.9 361 47.4
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 9.5e-72 275.0 415 43.4
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 9.5e-72 275.0 415 43.4
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 1.2e-71 274.6 417 43.2
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 1.2e-71 274.6 417 43.2
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 1.2e-71 274.6 386 45.9
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 1.2e-71 274.6 456 41.2
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 4.7e-71 272.7 397 45.3
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 4.7e-71 272.7 415 43.1
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.4e-70 271.2 459 39.7
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.8e-70 270.8 413 45.0
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 3.0e-70 270.0 461 41.0
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 4.0e-70 269.6 424 43.9
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 1.2e-69 268.1 399 44.6
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 1.5e-69 267.7 487 39.0
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.5e-69 267.7 533 37.5
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 3.4e-69 266.5 424 42.0
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 5.7e-69 265.8 427 42.6
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 7.5e-69 265.4 424 41.5
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 9.8e-69 265.0 422 42.2
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 2.8e-68 263.5 398 44.2
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 4.9e-68 262.7 413 42.4
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 8.3e-68 261.9 487 39.2
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 2.7e-66 256.9 415 42.2
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 2.9e-65 253.4 406 42.6
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 5.0e-65 252.7 419 41.5
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 5.0e-65 252.7 332 45.2
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 4.4e-61 239.6 416 39.7
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 4.1e-59 233.0 391 42.2
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 2.3e-57 227.3 319 44.8
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 8.3e-52 208.8 180 61.1
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 2.1e-50 204.1 122 88.5
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 2.3e-49 200.7 216 51.9
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.5e-48 198.0 199 54.8
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 4.4e-45 186.4 485 34.2
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 1.9e-40 171.0 262 44.7
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.4e-30 138.3 124 60.5
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.3e-28 131.7 415 32.0
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.3e-28 131.7 415 32.0
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 4.6e-26 123.2 237 38.4
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 2.5e-24 117.5 187 42.2
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 5.6e-24 116.3 137 51.1
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 2.1e-23 114.4 502 26.3
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 9.9e-21 105.5 124 52.4
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 1.1e-19 102.1 84 58.3
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 3.2e-19 100.5 173 37.0
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.7e-18 97.4 241 30.3
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 1.0e-17 95.5 80 60.0
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.5e-16 91.7 94 57.4
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 1.5e-16 91.7 197 34.0
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 2.6e-13 80.9 98 50.0
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 3.8e-12 77.0 70 55.7
MD02G1040500 Malus domestica HOM05D006752 ORTHO05D008597 7.4e-08 62.8 84 48.8
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 1.3e-07 62.0 78 41.0
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 2.1e-07 61.2 127 32.3
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 3.7e-07 60.5 119 31.1
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 3.1e-06 57.4 122 32.0
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 5.3e-06 56.6 112 37.5


User provided reference genes

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