Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g08930 Coffea canephora HOM05D018231 ORTHO05D010439 1.1e-43 179.5 88 100.0
Rhsim01G0078400 Rhododendron simsii HOM05D003010 ORTHO05D010439 1.3e-15 86.3 93 58.1
CiPaw.04G169500 Carya illinoinensis HOM05D009305 ORTHO05D010439 2.5e-14 82.0 81 53.1
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 2.5e-14 82.0 85 51.8
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 3.2e-14 81.6 84 54.8
Haze_25626 Corylus avellana HOM05D003010 ORTHO05D010439 9.4e-14 80.1 85 56.5
Cfa003337 Carpinus fangiana HOM05D003010 ORTHO05D010439 1.6e-13 79.3 86 55.8
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 2.1e-13 79.0 83 54.2
Aqoxy7G02055 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 1.0e-12 76.6 85 45.9
CSS0003493 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 2.3e-12 75.5 90 46.7
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 4.3e-11 71.2 82 50.0
CSS0005375 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 5.7e-11 70.9 90 46.7
CSS0010853 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 5.7e-11 70.9 90 46.7
CSS0012144 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 5.7e-11 70.9 90 46.7
QL02p087437 Quercus lobata HOM05D009305 ORTHO05D010439 5.7e-11 70.9 82 50.0
Thecc.09G121000 Theobroma cacao HOM05D029830 ORTHO05D010439 5.7e-11 70.9 87 50.6
Potri.008G015800 Populus trichocarpa HOM05D003010 ORTHO05D010439 1.7e-10 69.3 83 48.2
Ciclev10010147m.g Citrus clementina HOM05D003010 ORTHO05D010439 2.8e-10 68.6 89 47.2
CSS0046948 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 4.8e-10 67.8 94 44.7
Prupe.7G238200 Prunus persica HOM05D009305 ORTHO05D010439 4.8e-10 67.8 93 44.1
PSO339G5114 Papaver somniferum HOM05D003010 ORTHO05D010439 6.3e-10 67.4 89 43.8
PSO801G0586 Papaver somniferum HOM05D003010 ORTHO05D003623 6.3e-10 67.4 89 43.8
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 1.8e-09 65.9 90 46.7
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 2.4e-09 65.5 84 45.2
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 4.1e-09 64.7 85 43.5
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 5.3e-09 64.3 85 43.5
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 6.9e-09 63.9 85 43.5
Potri.008G015100 Populus trichocarpa HOM05D003010 ORTHO05D010439 9.1e-09 63.5 83 45.8
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 1.2e-08 63.2 83 45.8
Atru.chr7.1234 Acer truncatum HOM05D009305 ORTHO05D010439 1.5e-08 62.8 90 46.7
Manes.11G101800 Manihot esculenta HOM05D009305 ORTHO05D010439 2.0e-08 62.4 84 47.6
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 2.6e-08 62.0 83 44.6
Lsat_1_v5_gn_2_127061 Lactuca sativa HOM05D003010 ORTHO05D003623 3.4e-08 61.6 90 42.2
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 4.5e-08 61.2 83 47.0
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 5.9e-08 60.8 82 42.7
COL.COLO4_35181 Corchorus olitorius HOM05D018231 ORTHO05D010439 7.7e-08 60.5 99 41.4
Lj1A974G32 Lonicera japonica HOM05D003010 ORTHO05D003623 7.7e-08 60.5 98 38.8
Cpa.g.sc13.241 Carica papaya HOM05D003010 ORTHO05D003623 1.0e-07 60.1 81 45.7
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 1.0e-07 60.1 85 42.4
Lj4g0006068 Lotus japonicus HOM05D003010 ORTHO05D010439 1.3e-07 59.7 90 44.4
Lj4g0025656 Lotus japonicus HOM05D003010 ORTHO05D010439 1.3e-07 59.7 90 44.4
Carub.0006s1842 Capsella rubella HOM05D009305 ORTHO05D010439 1.7e-07 59.3 77 40.3
CDE04G1477 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 1.7e-07 59.3 85 38.8
HanXRQChr08g0229131 Helianthus annuus HOM05D003010 ORTHO05D003623 1.7e-07 59.3 83 43.4
RcHm_v2.0_Chr2g0089271 Rosa chinensis HOM05D009305 ORTHO05D010439 1.7e-07 59.3 92 39.1
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 2.2e-07 58.9 88 45.5
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 2.2e-07 58.9 85 42.4
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 2.9e-07 58.5 87 39.1
Migut.D02016 Erythranthe guttata HOM05D003010 ORTHO05D010439 2.9e-07 58.5 85 40.0
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 3.8e-07 58.2 85 42.4
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 3.8e-07 58.2 86 40.7
arahy.Tifrunner.gnm1.ann1.0EDZ2A Arachis hypogaea HOM05D009305 ORTHO05D010439 5.0e-07 57.8 93 41.9
A03p03330 Brassica napus HOM05D003010 ORTHO05D003623 5.0e-07 57.8 85 43.5
C03p03770 Brassica napus HOM05D003010 ORTHO05D003623 5.0e-07 57.8 85 43.5
BraA03t09685Z Brassica rapa HOM05D003010 ORTHO05D003623 5.0e-07 57.8 85 43.5
Glyma.17G117900 Glycine max HOM05D003010 ORTHO05D010439 5.0e-07 57.8 85 38.8
HanXRQChr10g0316761 Helianthus annuus HOM05D003010 ORTHO05D003623 5.0e-07 57.8 79 45.6
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 5.0e-07 57.8 83 41.0
BcaB01g05694 Brassica carinata HOM05D003010 ORTHO05D003623 6.5e-07 57.4 85 42.4
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 6.5e-07 57.4 85 41.2
CARHR205640 Cardamine hirsuta HOM05D003010 ORTHO05D003623 6.5e-07 57.4 89 44.9
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 6.5e-07 57.4 85 44.7
AL6G31590 Arabidopsis lyrata HOM05D009305 ORTHO05D010439 8.5e-07 57.0 82 40.2
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 8.5e-07 57.0 89 42.7
CsaV3_4G004320 Cucumis sativus L. HOM05D003010 ORTHO05D003623 8.5e-07 57.0 86 38.4
FAN26G0439 Fragaria x ananassa HOM05D009305 ORTHO05D010439 8.5e-07 57.0 92 39.1
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 8.5e-07 57.0 86 40.7
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 1.1e-06 56.6 87 41.4
HanXRQChr14g0461131 Helianthus annuus HOM05D003010 ORTHO05D003623 1.1e-06 56.6 89 41.6
Lsat_1_v5_gn_5_97941 Lactuca sativa HOM05D003010 ORTHO05D003623 1.1e-06 56.6 76 43.4
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 1.1e-06 56.6 88 43.2
Actinidia01040 Actinidia chinensis HOM05D000255 ORTHO05D000935 1.4e-06 56.2 85 42.4
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 1.4e-06 56.2 87 40.2
Sed0025535 Sechium edule HOM05D003010 ORTHO05D003623 1.4e-06 56.2 83 42.2
THA.LOC104811040 Tarenaya hassleriana HOM05D009305 ORTHO05D010439 1.4e-06 56.2 78 48.7
Eucgr.C01116 Eucalyptus grandis HOM05D009305 ORTHO05D010439 1.9e-06 55.8 82 46.3
FAN19G2542 Fragaria x ananassa HOM05D009305 ORTHO05D010439 1.9e-06 55.8 85 42.4
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 1.9e-06 55.8 82 41.5
BcaB01g05695 Brassica carinata HOM05D003010 ORTHO05D003623 2.5e-06 55.5 85 42.4
BcaB01g06045 Brassica carinata HOM05D003010 ORTHO05D003623 2.5e-06 55.5 85 42.4
A03p09790 Brassica napus HOM05D009305 ORTHO05D010439 2.5e-06 55.5 86 40.7
BolC3t12913H Brassica oleracea HOM05D003010 ORTHO05D003623 2.5e-06 55.5 85 42.4
ECA238G2786 Erigeron canadensis HOM05D003010 ORTHO05D003623 2.5e-06 55.5 91 37.4
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.5e-06 55.5 92 42.4
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 2.5e-06 55.5 92 41.3
Sp6g35370 Schrenkiella parvula HOM05D003010 ORTHO05D003623 2.5e-06 55.5 87 43.7
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 2.5e-06 55.5 82 41.5
AT5G07490 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 3.2e-06 55.1 87 43.7
C03p11370 Brassica napus HOM05D009305 ORTHO05D010439 3.2e-06 55.1 86 40.7
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 3.2e-06 55.1 82 39.0
BraA03t10294Z Brassica rapa HOM05D009305 ORTHO05D010439 4.2e-06 54.7 86 39.5
Carub.0004s1739 Capsella rubella HOM05D003010 ORTHO05D003623 4.2e-06 54.7 85 41.2
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 4.2e-06 54.7 91 41.8
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 4.2e-06 54.7 91 41.8
CsaV3_1G029730 Cucumis sativus L. HOM05D003010 ORTHO05D010439 5.5e-06 54.3 80 45.0
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 5.5e-06 54.3 88 43.2
Rhsim04G0160200 Rhododendron simsii HOM05D003010 ORTHO05D003623 5.5e-06 54.3 82 45.1
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 5.5e-06 54.3 83 43.4
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 5.5e-06 54.3 84 39.3
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 7.2e-06 53.9 85 41.2
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 7.2e-06 53.9 86 38.4
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 7.2e-06 53.9 88 43.2
Lalb_Chr13g0302051 Lupinus albus HOM05D009305 ORTHO05D010439 7.2e-06 53.9 86 45.3
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 7.2e-06 53.9 92 41.3
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 7.2e-06 53.9 79 38.0
BcaB01g04814 Brassica carinata HOM05D009305 ORTHO05D010439 9.4e-06 53.5 86 38.4
BolC3t13610H Brassica oleracea HOM05D009305 ORTHO05D010439 9.4e-06 53.5 86 39.5
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 9.4e-06 53.5 89 43.8


User provided reference genes

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