Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 2.2e-235 818.5 399 100.0
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 3.6e-190 668.3 394 82.0
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 3.1e-189 665.2 390 81.8
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 6.4e-187 657.5 393 79.9
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 1.1e-186 656.8 393 80.2
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 1.2e-185 653.3 391 80.6
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 3.9e-184 648.3 396 77.8
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 5.6e-183 644.4 393 79.1
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 2.8e-182 642.1 396 77.0
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 2.8e-182 642.1 387 78.8
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 4.8e-182 641.3 393 78.4
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 5.3e-181 637.9 398 77.4
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 6.9e-181 637.5 393 78.1
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 2.2e-179 632.5 389 77.9
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 4.9e-179 631.3 393 77.6
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 6.5e-179 630.9 390 77.7
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 6.5e-179 630.9 395 77.7
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.4e-178 629.8 387 78.3
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.9e-178 629.4 397 76.6
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.9e-178 629.4 397 76.6
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 1.9e-178 629.4 393 78.1
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 1.2e-177 626.7 388 77.8
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 3.5e-177 625.2 390 79.0
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 4.6e-177 624.8 395 77.0
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.6e-177 624.8 397 75.8
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 3.0e-176 622.1 394 74.6
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 6.7e-176 620.9 390 77.4
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.7e-176 620.9 397 75.1
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 8.7e-176 620.5 395 76.5
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 1.1e-175 620.2 394 76.4
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.5e-175 619.8 401 75.8
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 1.5e-175 619.8 391 77.0
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 1.9e-175 619.4 395 75.7
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 2.5e-175 619.0 400 75.2
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.3e-175 618.2 401 75.6
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 4.3e-175 618.2 405 77.0
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 9.6e-175 617.1 363 81.5
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 4.8e-174 614.8 397 77.1
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 6.2e-174 614.4 393 74.3
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 8.2e-174 614.0 394 76.1
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 4.0e-173 611.7 395 74.9
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 2.0e-172 609.4 387 76.0
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 4.5e-172 608.2 397 75.6
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 7.6e-172 607.4 390 74.1
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.3e-171 606.7 409 71.9
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 1.3e-171 606.7 405 74.8
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 1.3e-171 606.7 388 75.0
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.9e-171 605.5 389 73.3
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.5e-171 604.4 396 73.7
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 8.4e-171 604.0 386 75.9
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 8.4e-171 604.0 388 74.7
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 1.4e-170 603.2 398 73.4
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.4e-170 603.2 399 73.7
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.9e-170 602.8 388 73.2
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 1.9e-170 602.8 394 73.9
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 9.3e-170 600.5 386 75.6
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 1.2e-169 600.1 393 72.8
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.7e-169 599.0 387 73.1
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 7.9e-169 597.4 387 74.7
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 7.9e-169 597.4 387 72.6
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 1.3e-168 596.7 394 74.1
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.1e-167 593.6 388 72.9
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 1.1e-167 593.6 388 72.2
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 4.3e-167 591.7 388 72.7
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 7.4e-167 590.9 389 72.2
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 1.6e-166 589.7 388 72.7
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 2.8e-166 589.0 384 72.9
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 2.8e-166 589.0 398 72.1
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 3.7e-166 588.6 389 72.8
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 4.8e-166 588.2 392 71.4
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 6.3e-166 587.8 392 74.7
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 5.3e-165 584.7 398 72.1
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 5.3e-165 584.7 393 72.0
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 6.9e-165 584.3 396 72.2
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 6.9e-165 584.3 389 73.0
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 9.0e-165 583.9 384 72.4
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 2.0e-164 582.8 389 71.5
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 2.6e-164 582.4 388 72.4
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 2.6e-164 582.4 388 72.4
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 4.5e-164 581.6 388 72.2
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 1.0e-163 580.5 384 71.6
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 3.8e-163 578.6 397 71.8
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 6.5e-163 577.8 401 70.6
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 1.9e-162 576.2 390 71.5
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 1.9e-162 576.2 395 70.6
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 5.5e-162 574.7 389 70.4
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.2e-161 573.5 385 71.4
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.2e-161 573.5 389 70.4
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.2e-161 573.5 385 71.4
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.6e-161 573.2 385 73.0
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 2.1e-161 572.8 398 71.4
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 2.3e-160 569.3 396 71.5
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 3.9e-160 568.5 388 71.1
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 3.9e-160 568.5 397 70.8
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.1e-159 567.0 385 70.9
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 4.3e-159 565.1 401 70.1
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 2.8e-158 562.4 392 69.4
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 1.2e-156 557.0 399 70.9
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 2.0e-156 556.2 397 69.0
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 4.5e-156 555.1 446 65.7
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 3.8e-155 552.0 328 80.8
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.5e-154 549.3 397 68.0
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.1e-153 546.2 404 67.3
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 3.0e-152 542.3 311 82.6
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 5.7e-151 538.1 395 68.9
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 2.2e-150 536.2 404 68.6
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 4.1e-149 531.9 393 67.2
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 5.3e-149 531.6 396 65.9
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 4.5e-148 528.5 400 65.0
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.5e-147 524.6 386 67.4
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.5e-146 523.5 408 64.2
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 5.5e-146 521.5 388 66.8
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.6e-145 520.0 385 65.5
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.1e-145 519.6 388 67.0
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 2.1e-145 519.6 294 83.0
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 4.7e-145 518.5 386 65.8
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 6.1e-145 518.1 385 65.2
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.8e-144 516.5 388 66.8
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 3.9e-144 515.4 388 66.2
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 5.2e-144 515.0 385 64.7
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 6.7e-144 514.6 333 73.9
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 8.8e-144 514.2 387 64.6
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 9.7e-143 510.8 388 65.5
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 1.1e-138 497.3 396 64.6
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 3.6e-137 492.3 388 63.1
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.4e-133 480.3 403 61.8
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 7.7e-132 474.6 389 62.2
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 2.0e-127 459.9 387 58.7
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.0e-123 445.3 251 82.9
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 1.9e-122 443.4 282 75.5
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 5.0e-107 392.1 283 67.1
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-106 391.0 225 80.0
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-106 391.0 222 80.6
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 3.9e-99 365.9 283 63.6
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 3.3e-98 362.8 411 47.7
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 5.4e-93 345.5 403 47.6
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 1.2e-92 344.4 236 72.0
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.9e-91 339.3 273 57.9
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.5e-90 337.4 420 46.0
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 3.6e-89 332.8 256 62.5
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.1e-77 294.7 173 82.7
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 8.1e-73 278.5 177 78.5
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 5.3e-64 249.2 164 73.2
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.9e-62 242.7 296 42.9
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 5.5e-61 239.2 204 58.3
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 1.3e-57 228.0 167 65.3
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 2.9e-54 216.9 107 100.0
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.2e-53 212.2 168 62.5
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.2e-45 186.4 164 57.9
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 2.7e-44 183.7 313 37.7
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.8e-43 181.0 146 61.6
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 7.9e-36 155.6 224 43.8
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 8.8e-35 152.1 82 82.9
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 1.4e-32 144.8 244 39.3
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 5.3e-32 142.9 308 35.7
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 2.6e-31 140.6 254 37.0
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 7.7e-31 139.0 304 32.6
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 2.1e-28 131.0 392 29.3
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 6.1e-28 129.4 76 80.3
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 6.3e-25 119.4 249 35.7
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.4e-24 117.5 63 81.0
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.3e-24 116.3 63 81.0
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.2e-23 115.2 63 79.4
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 2.7e-20 104.0 147 43.5
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 1.4e-19 101.7 141 39.0
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 6.3e-17 92.8 146 40.4
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 7.7e-15 85.9 95 47.4
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.7e-14 84.7 170 35.3
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 5.2e-11 73.2 74 48.6
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 7.5e-10 69.3 119 39.5
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 9.8e-10 68.9 38 78.9
BolC2t07012H Brassica oleracea HOM05D004174 ORTHO05D004624 2.3e-06 57.8 45 57.8
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 2.9e-06 57.4 102 37.3
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 8.6e-06 55.8 103 35.9


User provided reference genes

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