Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 3.9e-122 441.4 217 100.0
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 8.0e-99 364.0 207 84.5
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 8.8e-98 360.5 205 84.9
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.2e-97 360.1 197 87.3
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 4.4e-97 358.2 205 83.9
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 4.4e-97 358.2 205 83.9
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.3e-96 356.7 205 83.9
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 6.3e-96 354.4 206 82.0
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 8.3e-96 354.0 205 82.9
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.4e-95 353.2 188 89.9
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.8e-95 352.8 191 88.5
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.8e-95 352.8 215 80.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 2.4e-95 352.4 215 80.9
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 4.1e-95 351.7 189 87.8
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 7.0e-95 350.9 189 87.8
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 9.2e-95 350.5 205 83.4
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 1.2e-94 350.1 190 88.4
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 2.7e-94 349.0 205 82.9
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 4.5e-94 348.2 206 81.6
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 5.9e-94 347.8 206 81.6
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.3e-93 346.7 199 83.9
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 1.7e-93 346.3 204 82.4
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.7e-93 346.3 205 82.9
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.7e-93 346.3 205 83.4
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 2.3e-93 345.9 205 82.9
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 5.0e-93 344.7 202 80.7
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 5.0e-93 344.7 179 91.1
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 6.6e-93 344.4 228 75.9
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 6.6e-93 344.4 203 80.8
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.5e-92 343.2 182 89.0
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.5e-92 343.2 203 81.3
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.9e-92 342.8 201 81.1
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.9e-92 342.8 211 77.7
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 2.5e-92 342.4 210 79.5
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.5e-92 342.4 205 82.4
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 4.3e-92 341.7 192 84.4
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 4.3e-92 341.7 222 76.1
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.3e-92 341.7 205 82.0
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 4.3e-92 341.7 206 81.6
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 2.1e-91 339.3 207 78.3
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 2.1e-91 339.3 207 78.3
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 2.1e-91 339.3 207 78.3
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.8e-91 339.0 182 88.5
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 6.1e-91 337.8 206 80.6
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 8.0e-91 337.4 188 84.6
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.4e-90 336.7 185 84.9
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.8e-90 336.3 210 76.7
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.0e-90 335.5 205 80.5
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 3.0e-90 335.5 197 80.2
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 5.2e-90 334.7 194 84.0
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 5.2e-90 334.7 191 83.2
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 6.8e-90 334.3 200 78.5
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 8.9e-90 334.0 205 77.1
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 8.9e-90 334.0 205 77.1
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 8.9e-90 334.0 171 91.8
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 1.5e-89 333.2 227 72.7
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.5e-89 333.2 182 86.3
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 3.4e-89 332.0 205 81.5
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 7.5e-89 330.9 187 84.5
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 3.7e-88 328.6 174 88.5
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 6.4e-88 327.8 188 85.1
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 8.3e-88 327.4 203 77.8
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 1.1e-87 327.0 186 83.3
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 2.4e-87 325.9 207 77.8
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 3.2e-87 325.5 205 77.1
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 4.1e-87 325.1 184 82.6
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 5.4e-87 324.7 209 77.0
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 5.4e-87 324.7 209 77.0
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.2e-86 323.6 252 66.7
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 1.6e-86 323.2 179 86.6
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.6e-86 323.2 173 87.3
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 2.7e-86 322.4 182 83.5
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.3e-85 320.1 209 75.1
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 1.5e-84 316.6 205 75.6
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.3e-84 315.5 181 84.0
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 3.3e-84 315.5 205 74.1
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 3.3e-84 315.5 179 84.9
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 2.1e-83 312.8 207 74.4
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 2.8e-83 312.4 185 82.2
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 3.6e-83 312.0 189 76.7
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.8e-82 309.7 205 73.2
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 5.2e-82 308.1 195 74.9
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 9.8e-81 303.9 215 71.6
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 9.8e-81 303.9 205 71.7
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 1.7e-80 303.1 172 82.6
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.7e-80 303.1 193 77.7
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 3.2e-79 298.9 187 77.0
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 7.8e-78 294.3 199 72.4
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 5.2e-74 281.6 206 68.4
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 8.3e-72 274.2 175 75.4
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.5e-68 262.7 140 88.6
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.1e-67 257.7 155 81.3
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.2e-65 253.8 155 81.3
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 4.4e-65 251.9 175 71.4
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 5.8e-65 251.5 186 62.4
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 3.8e-64 248.8 153 79.1
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.1e-63 247.3 209 65.1
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.1e-63 247.3 172 72.7
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.4e-63 246.9 154 79.9
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 4.1e-63 245.4 205 62.9
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 1.6e-62 243.4 156 77.6
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 2.1e-62 243.0 186 67.2
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 7.8e-62 241.1 150 80.0
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.9e-60 236.5 157 73.9
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 2.8e-59 232.6 173 65.9
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 6.2e-59 231.5 149 77.2
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 4.0e-58 228.8 134 84.3
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 9.9e-57 224.2 277 50.9
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.4e-47 193.7 188 52.1
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.2e-46 190.7 99 90.9
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 3.5e-46 189.1 101 88.1
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.3e-45 187.2 157 61.1
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.6e-41 172.9 128 68.0
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.5e-41 172.2 89 89.9
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.3e-40 170.6 174 50.0
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 2.9e-40 169.5 99 80.8
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 5.1e-37 158.7 171 49.1
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 2.6e-33 146.4 85 80.0
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.1e-31 141.0 73 89.0
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 8.7e-29 131.3 76 82.9
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-26 124.4 131 51.9
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 9.1e-18 94.7 164 36.0
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-15 87.8 89 55.1
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.8e-13 80.5 39 89.7
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.1e-13 79.0 48 70.8
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 6.3e-11 72.0 37 89.2
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 6.3e-11 72.0 37 89.2
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 3.6e-06 56.2 28 85.7
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 3.6e-06 56.2 40 60.0


User provided reference genes

Program Settings