Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 3.7e-91 338.2 170 100.0
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 3.1e-82 308.5 170 89.4
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 9.1e-82 307.0 170 88.2
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 1.6e-81 306.2 170 88.8
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 2.0e-81 305.8 167 89.2
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 3.5e-81 305.1 170 88.8
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 4.5e-81 304.7 167 88.6
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 5.9e-81 304.3 170 87.6
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.0e-80 303.5 167 87.4
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 2.2e-80 302.4 170 86.5
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 6.5e-80 300.8 170 86.5
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 6.5e-80 300.8 170 86.5
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 8.5e-80 300.4 170 86.5
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.1e-79 300.1 167 87.4
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 1.5e-79 299.7 167 88.0
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.2e-79 298.5 170 85.9
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 4.2e-79 298.1 170 85.3
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 5.5e-79 297.7 167 86.2
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 7.2e-79 297.4 170 85.3
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.6e-78 296.2 170 85.3
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 1.6e-78 296.2 167 85.0
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 3.6e-78 295.0 170 84.1
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 4.7e-78 294.7 170 83.5
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 8.0e-78 293.9 170 85.3
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 8.8e-77 290.4 170 84.1
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 2.0e-76 289.3 167 83.2
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 2.6e-76 288.9 168 84.5
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 2.6e-76 288.9 170 82.9
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.6e-76 288.9 167 83.2
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 3.3e-76 288.5 168 83.9
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 3.3e-76 288.5 167 83.2
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 4.4e-76 288.1 168 83.3
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 4.4e-76 288.1 167 84.4
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 5.7e-76 287.7 170 82.9
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 5.7e-76 287.7 170 82.9
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 5.7e-76 287.7 168 83.3
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 5.7e-76 287.7 167 84.4
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 7.5e-76 287.3 167 83.8
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 9.7e-76 287.0 170 81.8
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 9.7e-76 287.0 170 81.8
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 1.3e-75 286.6 167 84.4
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.7e-75 286.2 170 81.8
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 2.8e-75 285.4 170 81.8
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 4.8e-75 284.6 164 84.8
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 6.3e-75 284.3 170 81.2
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 8.2e-75 283.9 167 83.2
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.1e-74 283.5 167 81.4
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 1.4e-74 283.1 170 80.6
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 1.4e-74 283.1 170 80.6
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 1.8e-74 282.7 168 82.7
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 2.4e-74 282.3 167 80.8
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 4.1e-74 281.6 167 82.0
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 4.1e-74 281.6 160 86.9
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 7.0e-74 280.8 167 82.6
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 7.0e-74 280.8 167 81.4
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 9.1e-74 280.4 167 79.6
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 9.1e-74 280.4 160 86.9
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 9.1e-74 280.4 167 82.0
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.2e-73 280.0 167 81.4
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 2.7e-73 278.9 167 80.8
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 2.7e-73 278.9 170 80.0
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 2.7e-73 278.9 167 80.2
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 3.5e-73 278.5 167 81.4
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 3.5e-73 278.5 169 78.7
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 4.5e-73 278.1 167 82.0
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 4.5e-73 278.1 167 79.6
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 5.9e-73 277.7 169 77.5
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 5.9e-73 277.7 167 82.0
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.0e-72 276.9 169 77.5
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.0e-72 276.9 170 80.6
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 1.0e-72 276.9 167 79.6
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.3e-72 276.6 169 77.5
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 1.7e-72 276.2 167 79.6
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.7e-72 276.2 167 80.8
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 2.2e-72 275.8 167 81.4
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 2.9e-72 275.4 167 79.6
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 2.9e-72 275.4 167 79.6
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 2.9e-72 275.4 196 71.9
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 2.9e-72 275.4 167 79.0
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 3.8e-72 275.0 167 79.0
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 3.8e-72 275.0 196 71.9
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 6.5e-72 274.2 167 79.0
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 6.5e-72 274.2 167 80.2
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 8.5e-72 273.9 204 68.6
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 8.5e-72 273.9 167 79.0
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 1.9e-71 272.7 169 76.3
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.9e-71 272.7 167 78.4
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.9e-71 272.7 167 79.6
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.9e-71 272.7 167 79.6
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 2.5e-71 272.3 167 79.0
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 3.2e-71 271.9 167 79.0
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 3.2e-71 271.9 167 79.6
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 3.2e-71 271.9 167 79.6
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 4.2e-71 271.6 167 78.4
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 4.2e-71 271.6 167 78.4
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 5.5e-71 271.2 167 78.4
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 5.5e-71 271.2 167 78.4
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 7.2e-71 270.8 167 78.4
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 7.2e-71 270.8 167 79.0
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 7.2e-71 270.8 167 79.6
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 9.4e-71 270.4 167 79.0
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 9.4e-71 270.4 168 79.8
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 1.0e-69 266.9 167 79.0
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 1.4e-69 266.5 167 76.6
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 1.4e-69 266.5 167 74.9
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 2.6e-68 262.3 167 77.2
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 2.6e-68 262.3 167 74.3
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 4.4e-68 261.5 167 73.7
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 2.0e-65 252.7 167 70.7
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 2.7e-57 225.7 225 52.9
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.0e-56 223.8 134 81.3
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 5.0e-56 221.5 344 41.3
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 6.6e-56 221.1 167 59.9
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.1e-55 220.3 122 88.5
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.2e-54 216.9 159 71.7
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 1.3e-51 206.8 167 56.9
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.2e-49 200.3 126 77.0
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.3e-48 196.8 121 80.2
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.6e-46 188.7 121 76.9
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 6.2e-46 188.0 119 75.6
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.7e-43 178.7 115 75.7
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 8.1e-38 161.0 121 70.2
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 6.4e-35 151.4 95 80.0
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 5.1e-24 115.2 73 78.1
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.3e-14 84.0 50 76.0
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.9e-10 70.1 68 52.9
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 8.7e-08 61.2 47 63.8
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.9e-07 60.1 60 51.7
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 5.6e-07 58.5 28 85.7
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 3.7e-06 55.8 127 30.7


User provided reference genes

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