Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 2615.1 1331 100.0
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1968.7 1348 76.3
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1961.4 1352 75.4
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1942.9 1339 75.1
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1922.5 1342 74.2
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1900.2 1343 73.6
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1893.2 1346 72.9
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1892.5 1346 72.1
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1889.4 1346 72.6
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1881.7 1407 70.9
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1877.8 1340 73.6
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1877.4 1357 71.9
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1872.4 1353 72.9
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1862.8 1354 71.4
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1862.4 1363 71.9
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1859.3 1338 72.6
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1857.0 1350 71.6
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1857.0 1347 71.8
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1856.3 1347 71.1
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1855.9 1350 71.7
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1855.5 1344 71.7
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1841.2 1342 71.2
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1840.9 1380 70.2
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1838.5 1353 70.7
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1838.5 1349 71.9
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1834.3 1345 70.6
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1834.3 1342 71.3
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1833.5 1337 72.0
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1833.2 1341 71.6
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1832.4 1345 70.5
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1829.3 1345 70.2
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1817.0 1357 70.4
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1815.0 1349 70.5
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1814.7 1361 69.7
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1806.6 1348 69.8
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1806.2 1333 69.9
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1805.0 1356 70.3
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1804.3 1358 69.9
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1801.6 1343 70.1
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1790.8 1286 72.3
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1790.0 1352 69.6
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1790.0 1349 69.3
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1789.2 1550 62.4
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1779.2 1334 70.5
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1772.7 1336 69.1
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1771.9 1352 69.4
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1771.5 1349 69.9
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1762.7 1352 68.9
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1761.5 1372 68.4
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1742.2 1371 67.2
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1738.8 1340 67.4
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1738.0 1357 68.2
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1734.5 1273 72.3
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1733.0 1362 67.3
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1730.3 1342 66.8
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1729.9 1356 67.0
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1728.8 1395 66.0
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1728.0 1342 67.8
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1727.2 1344 67.4
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1725.3 1363 66.3
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1724.5 1335 67.3
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1722.2 1342 67.4
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1721.8 1381 66.3
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1721.4 1354 66.8
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1719.9 1361 66.9
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1719.5 1351 66.6
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1717.6 1349 66.3
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1716.0 1360 66.9
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1711.4 1336 65.8
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1708.7 1316 68.4
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1708.0 1349 66.3
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1704.5 1343 65.5
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1702.6 1337 65.6
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1691.8 1358 64.7
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1686.0 1342 67.2
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1681.4 1341 66.1
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1680.2 1358 64.7
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1675.6 1359 65.8
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1661.7 1347 64.1
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1654.8 1334 65.9
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1647.5 1357 66.0
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1622.8 1408 61.7
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1609.0 1369 62.9
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1606.3 1335 63.0
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1596.6 1251 66.7
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1593.9 1105 74.5
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1574.7 1347 61.5
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1563.5 1182 69.2
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1558.9 1234 66.3
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1549.6 1362 61.0
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1533.1 1331 61.0
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1530.0 1329 61.1
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1513.4 1330 60.2
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1499.2 1344 61.2
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1490.3 1351 59.9
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1486.5 1339 59.6
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1441.4 1329 57.7
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1432.5 1329 57.6
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1432.5 1329 57.6
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1431.4 1330 57.6
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1431.4 1327 57.5
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1431.0 1327 57.2
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1417.1 1045 72.8
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1398.6 1330 56.6
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1388.6 1010 72.4
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1384.4 937 76.6
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1374.4 1024 71.0
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1305.4 1003 70.5
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 0.0e+00 1298.5 1397 55.0
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 0.0e+00 1286.6 1282 55.7
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1281.9 1007 70.4
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 0.0e+00 1278.5 1460 51.7
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1264.6 838 77.0
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1223.4 858 74.8
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1215.3 857 73.9
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 0.0e+00 1190.3 909 68.3
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 0.0e+00 1167.5 882 70.4
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1151.7 1378 48.0
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1139.8 1371 47.5
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 0.0e+00 1094.3 1389 46.7
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 2.1e-290 1003.0 751 70.6
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 5.5e-275 951.8 631 76.4
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 1.5e-264 917.1 1060 51.2
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 9.7e-264 914.4 1065 50.2
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 1.4e-249 867.5 613 70.3
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 1.3e-244 850.9 1550 38.5
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 1.9e-230 803.9 923 52.8
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 5.6e-211 739.2 656 62.5
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 7.9e-197 692.2 746 55.1
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 2.2e-178 630.9 565 60.0
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 9.0e-177 625.5 416 76.7
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 1.9e-174 617.8 418 77.0
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.0e-172 612.1 565 61.2
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 7.2e-166 589.3 423 73.0
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 3.8e-159 567.0 361 78.1
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 5.2e-148 530.0 487 58.3
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 2.2e-143 514.6 533 55.2
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 3.5e-136 490.7 325 74.5
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 1.4e-124 452.2 336 67.6
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 3.7e-122 444.1 408 59.3
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 1.5e-110 405.6 326 62.6
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 4.1e-105 387.5 335 61.2
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 1.7e-103 382.1 319 62.1
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 3.3e-102 377.9 259 75.3
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 7.3e-94 350.1 221 81.9
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 3.8e-90 337.8 361 50.7
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 6.4e-82 310.5 319 50.8
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 2.3e-79 302.0 234 64.1
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 1.4e-76 292.7 260 61.2
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 7.4e-70 270.4 324 45.4
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 7.9e-64 250.4 218 63.8
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.5e-62 246.1 277 52.0
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 1.8e-44 186.0 132 68.9
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 6.5e-42 177.6 117 76.1
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 9.4e-41 173.7 115 76.5
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 2.0e-38 166.0 201 50.2
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 3.1e-36 158.7 232 43.1
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 7.5e-30 137.5 89 73.0
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.0e-23 117.1 86 67.4
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 2.6e-22 112.5 101 54.5
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 9.8e-22 110.5 129 49.6
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 1.3e-21 110.2 133 51.1
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 1.4e-20 106.7 76 71.1
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 1.8e-20 106.3 61 78.7
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 7.0e-20 104.4 61 77.0
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 7.0e-20 104.4 61 77.0
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 3.5e-19 102.1 61 75.4
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 2.9e-18 99.0 92 54.3
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 3.8e-18 98.6 58 75.9
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 5.2e-15 88.2 254 32.7
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 1.5e-14 86.7 74 59.5
RcHm_v2.0_Chr1g0384271 Rosa chinensis HOM05D004002 ORTHO05D004668 5.0e-10 71.6 62 51.6
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 4.7e-08 65.1 84 47.6
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 1.8e-07 63.2 32 93.8
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 4.4e-06 58.5 48 64.6


User provided reference genes

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