Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 0.0e+00 2171.4 1120 100.0
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 2.4e-287 992.6 1120 49.6
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 1.3e-282 976.9 1118 49.1
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 6.2e-280 968.0 1127 48.6
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 9.0e-279 964.1 1118 48.6
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 1.6e-275 953.4 1123 48.6
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 1.0e-274 950.7 1207 47.6
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 5.7e-273 944.9 1151 46.7
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 9.7e-273 944.1 1154 47.0
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 2.1e-267 926.4 1150 46.3
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 2.8e-264 916.0 1107 47.7
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 5.0e-261 905.2 1162 45.0
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 1.2e-259 900.6 1146 46.2
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 5.1e-258 895.2 1154 45.5
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 3.3e-257 892.5 1149 46.2
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 3.3e-257 892.5 1167 44.0
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 5.9e-254 881.7 1236 43.7
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 1.2e-251 874.0 1144 44.9
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 2.1e-251 873.2 1149 45.5
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 4.4e-249 865.5 1130 45.2
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 7.5e-249 864.8 1133 45.3
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 3.5e-246 855.9 1125 45.1
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 6.5e-245 851.7 1155 44.2
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 1.2e-243 847.4 1129 44.6
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 1.6e-243 847.0 1162 43.5
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 2.7e-243 846.3 1158 43.4
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 6.1e-243 845.1 1254 41.8
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 2.6e-241 839.7 1143 43.2
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 9.1e-239 831.2 1155 43.4
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 3.5e-238 829.3 1155 41.7
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.0e-237 827.8 1158 42.7
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 3.8e-237 825.9 1155 43.0
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 3.2e-236 822.8 1118 43.5
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 1.5e-233 813.9 987 46.7
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 1.3e-232 810.8 1142 42.2
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 2.0e-230 803.5 1131 43.3
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 1.0e-229 801.2 1142 41.0
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 1.7e-229 800.4 1145 41.4
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 5.0e-229 798.9 1094 43.7
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 1.9e-228 797.0 1141 41.2
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 6.1e-227 792.0 1129 41.9
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 2.3e-226 790.0 1143 40.6
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 1.6e-222 777.3 1145 41.0
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 1.5e-220 770.8 1163 40.0
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 1.9e-220 770.4 1138 41.7
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 7.3e-220 768.5 1138 41.7
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 2.8e-219 766.5 1165 40.3
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 1.6e-214 750.7 976 44.5
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 1.6e-214 750.7 1152 39.2
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 4.6e-214 749.2 1133 41.1
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 2.1e-211 740.3 1026 42.6
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 1.1e-210 738.0 1135 39.3
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 2.4e-207 726.9 1146 38.5
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 4.6e-198 696.0 871 45.5
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 6.6e-197 692.2 1155 38.2
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 3.0e-189 666.8 1014 40.1
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 3.2e-183 646.7 839 44.6
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 3.0e-181 640.2 803 44.1
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 2.0e-177 627.5 1137 37.4
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 1.1e-172 611.7 958 39.9
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 1.2e-169 601.7 894 40.0
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.2e-161 575.1 856 41.2
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 5.0e-160 569.7 709 44.6
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 3.1e-154 550.4 1056 34.6
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 6.1e-150 536.2 914 38.1
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 5.1e-149 533.1 860 38.5
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 1.3e-147 528.5 1094 35.4
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 2.6e-140 504.2 671 42.6
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 3.1e-138 497.3 1093 31.6
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 3.5e-137 493.8 1129 33.4
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 4.7e-134 483.4 1132 33.3
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 2.0e-132 478.0 1207 29.6
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 6.1e-110 403.3 1007 30.4
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 3.7e-107 394.0 865 32.7
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 3.3e-95 354.4 412 48.1
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 2.4e-90 338.2 310 55.2
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 3.9e-80 304.3 322 52.8
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 1.2e-76 292.7 419 42.0
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 3.1e-69 268.1 205 62.0
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 1.2e-65 256.1 842 26.0
GSVIVG01015592001 Vitis vinifera HOM05D007419 ORTHO05D009327 4.3e-63 247.7 258 54.7
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 1.5e-60 239.2 1103 22.9
CSS0048092 Camellia sinensis var. sinensis HOM05D007419 ORTHO05D009327 1.2e-57 229.6 227 57.7
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.2e-57 229.6 255 49.0
Actinidia21951 Actinidia chinensis HOM05D007419 ORTHO05D009327 1.9e-55 222.2 251 51.8
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 2.0e-52 212.2 327 40.4
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 1.5e-47 196.1 451 32.2
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 3.3e-47 194.9 367 31.1
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 4.8e-46 191.0 448 31.7
TWI34G1676 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 1.8e-45 189.1 212 52.4
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 1.4e-37 162.9 168 54.8
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 1.4e-37 162.9 168 54.8
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 3.9e-32 144.8 172 50.0
MSTRG.26436 Avicennia marina HOM05D007419 ORTHO05D009327 4.4e-31 141.4 168 49.4
Dinv10908 Davidia involucrata HOM05D007419 ORTHO05D009327 9.1e-29 133.7 112 66.1
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 7.7e-28 130.6 227 38.8
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 1.0e-27 130.2 968 21.3
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 5.7e-23 114.4 85 63.5
Eucgr.C01386 Eucalyptus grandis HOM05D007419 ORTHO05D009327 2.2e-22 112.5 169 42.0
SEGI_28656 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 6.7e-16 90.9 674 19.9
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 3.8e-11 75.1 102 47.1


User provided reference genes

Program Settings