Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 0.0e+00 1636.3 863 100.0
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 1.6e-275 953.0 808 64.0
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 1.1e-273 946.8 864 61.1
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 3.0e-266 922.2 887 59.5
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 8.8e-266 920.6 871 59.8
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 1.2e-265 920.2 871 59.7
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 4.2e-260 901.7 867 58.8
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 3.6e-259 898.7 861 59.8
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 4.7e-259 898.3 875 58.4
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 3.7e-256 888.6 871 58.7
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 5.4e-255 884.8 872 58.0
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 3.5e-254 882.1 872 57.8
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 7.7e-254 880.9 844 60.1
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 1.1e-252 877.1 843 58.5
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 2.2e-248 862.8 860 57.3
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 1.8e-247 859.8 868 56.9
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 1.7e-245 853.2 844 56.9
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 1.4e-242 843.6 880 56.0
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 4.4e-241 838.6 880 56.2
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 2.4e-239 832.8 804 58.3
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 2.4e-239 832.8 832 59.0
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 7.0e-239 831.2 872 56.2
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 2.3e-237 826.2 873 55.1
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 5.6e-236 821.6 878 54.8
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 6.2e-235 818.1 856 55.0
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 1.4e-234 817.0 888 54.3
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 2.3e-234 816.2 861 55.1
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 4.0e-234 815.5 873 54.9
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 6.8e-234 814.7 857 55.8
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 8.9e-234 814.3 858 54.8
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 3.4e-233 812.4 871 54.5
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 1.1e-231 807.4 835 56.2
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 1.9e-231 806.6 818 58.7
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.9e-231 806.6 888 54.1
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.9e-231 806.6 888 53.7
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 3.2e-231 805.8 873 54.3
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 5.4e-231 805.1 859 55.5
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 2.1e-230 803.1 868 53.9
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 2.7e-230 802.7 866 54.4
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.7e-230 802.7 796 56.8
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 6.0e-230 801.6 814 57.6
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 3.9e-229 798.9 1000 49.7
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 1.1e-228 797.3 874 53.7
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 2.5e-228 796.2 872 54.1
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 7.3e-228 794.7 868 53.6
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.2e-227 793.9 889 54.1
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.4e-226 790.4 877 53.2
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 1.8e-226 790.0 859 53.2
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 3.1e-226 789.3 868 52.6
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 1.2e-222 777.3 907 51.8
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 2.3e-221 773.1 803 56.4
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 8.6e-221 771.2 1006 47.2
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 3.6e-219 765.8 887 52.9
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 1.4e-218 763.8 822 54.7
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 6.8e-218 761.5 870 53.1
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 2.0e-217 760.0 802 54.2
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 2.0e-217 760.0 874 51.3
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 2.2e-216 756.5 810 54.9
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 3.8e-216 755.7 866 51.4
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 8.4e-216 754.6 802 54.0
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 8.4e-216 754.6 867 52.0
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 1.1e-215 754.2 873 51.4
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 4.2e-215 752.3 951 49.0
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 9.3e-215 751.1 866 53.2
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.2e-214 750.7 876 50.3
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 1.7e-213 746.9 879 51.4
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 6.6e-213 745.0 896 51.8
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 4.8e-211 738.8 714 57.7
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 1.4e-210 737.3 851 51.4
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.8e-210 736.9 855 51.8
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 3.1e-210 736.1 859 51.2
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.5e-209 733.8 859 51.0
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 2.0e-209 733.4 787 54.0
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 4.4e-209 732.3 873 50.6
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 5.8e-209 731.9 861 51.5
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 7.6e-209 731.5 859 51.3
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 1.3e-208 730.7 892 50.3
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 1.7e-208 730.3 787 54.1
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 2.9e-208 729.6 867 50.2
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 4.9e-208 728.8 847 51.1
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 4.9e-208 728.8 876 50.9
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 6.4e-208 728.4 844 50.7
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 8.4e-208 728.0 713 57.9
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 1.1e-207 727.6 867 50.2
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 8.7e-205 718.0 807 52.9
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 5.6e-204 715.3 871 50.2
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 2.1e-203 713.4 801 53.3
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 3.6e-203 712.6 865 50.2
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 9.0e-202 708.0 797 51.2
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 1.7e-200 703.7 1015 46.5
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 1.9e-199 700.3 876 49.0
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 4.2e-199 699.1 836 51.3
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 1.6e-198 697.2 675 59.6
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 1.2e-193 681.0 803 50.3
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 3.4e-193 679.5 879 47.9
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 8.4e-192 674.9 854 49.8
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 2.5e-191 673.3 864 50.1
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.0e-189 667.9 658 59.1
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 6.9e-186 655.2 721 53.7
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 1.2e-185 654.4 806 49.5
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 2.6e-185 653.3 658 58.1
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 9.3e-183 644.8 617 58.3
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 9.3e-183 644.8 862 48.0
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 1.3e-181 641.0 852 48.2
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 8.7e-181 638.3 848 47.8
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.3e-179 634.4 913 45.0
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 2.4e-178 630.2 656 55.5
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 3.1e-178 629.8 810 48.5
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 5.3e-178 629.0 866 45.3
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 6.5e-176 622.1 857 47.0
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.4e-175 620.9 878 45.4
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 4.6e-174 615.9 865 46.8
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 6.1e-174 615.5 843 46.9
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 5.9e-169 599.0 588 58.5
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 3.2e-167 593.2 847 45.5
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.2e-166 591.3 603 56.9
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 4.7e-166 589.3 850 45.1
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 1.1e-164 584.7 829 45.7
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 4.4e-164 582.8 845 44.9
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 9.7e-164 581.6 771 49.7
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 2.2e-163 580.5 843 45.0
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 4.8e-163 579.3 861 44.0
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.4e-162 577.8 652 52.0
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 1.8e-162 577.4 856 44.4
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 7.7e-161 572.0 853 44.2
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 8.5e-160 568.5 855 44.4
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 1.6e-158 564.3 898 44.2
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 2.6e-156 557.0 657 51.0
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 3.3e-156 556.6 860 43.6
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 4.8e-155 552.7 665 49.9
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 7.2e-151 538.9 852 43.1
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 7.0e-146 522.3 803 43.3
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 5.9e-145 519.2 821 42.9
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 9.4e-143 511.9 802 42.9
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 4.5e-137 493.0 837 39.9
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 2.3e-136 490.7 852 39.9
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 8.0e-134 482.3 823 40.6
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 4.6e-129 466.5 563 49.9
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 3.5e-121 440.3 837 39.2
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.1e-117 428.7 442 54.5
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 1.7e-115 421.4 628 44.3
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 2.1e-113 414.5 590 44.9
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 1.1e-109 402.1 846 35.1
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 6.6e-104 382.9 865 34.7
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 1.5e-103 381.7 816 35.9
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 2.4e-101 374.4 442 49.8
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 6.0e-97 359.8 640 41.6
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 2.1e-94 351.3 791 35.5
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 8.1e-94 349.4 822 35.5
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 1.0e-75 289.3 367 49.0
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 8.2e-70 269.6 451 42.1
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 8.2e-54 216.5 564 30.9
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 6.3e-46 190.3 331 41.1
BolC4t25898H Brassica oleracea HOM05D003622 ORTHO05D004453 1.5e-42 179.1 332 39.2
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.2e-38 165.2 119 66.4
BraA04t16634Z Brassica rapa HOM05D003622 ORTHO05D004453 6.3e-38 163.7 234 42.3
C04p43210 Brassica napus HOM05D003622 ORTHO05D004453 1.8e-37 162.2 210 46.7
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 2.4e-37 161.8 305 36.1
A04p09720 Brassica napus HOM05D003622 ORTHO05D004453 5.3e-37 160.6 275 40.4
AagrBONN_evm.TU.Sc2ySwM_344.2257 Anthoceros agrestis HOM05D003622 ORTHO05D004453 3.8e-35 154.5 217 43.3
Cpa.g.sc46.42 Carica papaya HOM05D003622 ORTHO05D004453 5.2e-32 144.1 160 55.0
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 1.5e-31 142.5 249 36.9
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 2.0e-28 132.1 163 46.0
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 2.7e-28 131.7 143 54.5
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 1.3e-27 129.4 118 58.5
Haze_25503 Corylus avellana HOM05D003622 ORTHO05D004453 3.6e-25 121.3 121 57.9
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.7e-22 112.5 115 56.5
ClCG06G011510 Citrullus lanatus HOM05D003622 ORTHO05D004453 2.0e-20 105.5 130 53.1
SEGI_12874 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 7.3e-18 97.1 76 61.8
ClCG06G011520 Citrullus lanatus HOM05D003622 ORTHO05D004453 9.5e-18 96.7 120 49.2
MBI13_g36805_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.0e-16 93.2 141 45.4
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.0e-16 93.2 127 43.3
Potri.004G126780 Populus trichocarpa HOM05D000030 ORTHO05D000009 4.0e-16 91.3 99 54.5
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.2e-15 89.7 163 36.8
Potri.004G126740 Populus trichocarpa HOM05D000030 ORTHO05D000009 3.4e-15 88.2 99 53.5
HPP92_000472 Vanilla planifolia HOM05D003622 ORTHO05D004453 3.4e-15 88.2 174 39.1
SEGI_22443 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 2.4e-13 82.0 127 42.5
SHI22468 Sapria himalayana HOM05D003622 ORTHO05D004453 5.4e-13 80.9 114 45.6
Oeu042754.1 Olea europaea HOM05D003622 ORTHO05D004453 1.2e-12 79.7 48 75.0
MBI13_g48239_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.3e-11 76.3 144 37.5
Sabra10G0016400 Salix brachista HOM05D003622 ORTHO05D004453 3.3e-10 71.6 52 59.6
CBR_g27932 Chara braunii HOM05D000019 ORTHO05D000002 6.2e-09 67.4 175 29.1
MBI13_g36809_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D240810 1.0e-08 66.6 40 72.5
MD02G1023900 Malus domestica HOM05D003622 ORTHO05D048666 1.5e-07 62.8 92 38.0
Actinidia38716 Actinidia chinensis HOM05D003622 ORTHO05D004453 3.4e-07 61.6 57 56.1
Oeu055964.1 Olea europaea HOM05D001574 ORTHO05D000708 3.4e-07 61.6 44 68.2
Haze_25504 Corylus avellana HOM05D003622 ORTHO05D004453 2.2e-06 58.9 51 58.8


User provided reference genes

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