Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 0.0e+00 1471.4 734 100.0
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 0.0e+00 1471.4 734 100.0
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 0.0e+00 1091.3 737 73.5
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1081.2 715 73.0
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 0.0e+00 1080.9 719 73.7
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 1.5e-311 1072.4 729 72.3
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 9.4e-309 1063.1 719 72.6
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 1.0e-307 1059.7 719 71.9
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 1.4e-307 1059.3 719 71.3
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 1.7e-305 1052.4 720 72.1
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 8.2e-305 1050.0 689 74.0
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 8.2e-305 1050.0 717 72.2
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 1.8e-304 1048.9 719 71.5
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 3.1e-304 1048.1 717 71.5
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 5.3e-304 1047.3 715 72.3
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 4.5e-303 1044.3 768 68.1
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 2.2e-302 1042.0 719 71.2
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 2.9e-302 1041.6 719 72.0
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 3.2e-301 1038.1 719 70.9
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 1.6e-300 1035.8 731 69.1
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 2.1e-300 1035.4 717 70.2
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 4.7e-300 1034.2 723 70.1
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.9e-300 1033.5 723 70.1
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 2.3e-299 1031.9 720 70.8
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 3.3e-298 1028.1 721 68.8
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.3e-298 1028.1 719 70.2
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 9.7e-298 1026.5 723 70.3
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.3e-297 1026.2 719 70.1
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 3.7e-297 1024.6 711 71.6
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.8e-297 1024.2 718 69.8
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 2.0e-295 1018.8 710 70.6
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 1.0e-294 1016.5 721 69.2
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.2e-292 1009.6 727 68.0
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 2.7e-292 1008.4 723 69.6
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 2.7e-292 1008.4 727 68.0
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 6.1e-292 1007.3 720 69.2
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 1.1e-290 1003.0 719 69.3
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 1.5e-290 1002.7 709 69.3
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 4.4e-290 1001.1 710 69.3
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 7.4e-290 1000.3 722 67.7
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 2.2e-289 998.8 716 67.9
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 2.6e-287 991.9 716 67.7
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 1.1e-285 986.5 726 67.8
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 5.5e-285 984.2 676 71.2
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 9.4e-285 983.4 719 67.3
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 1.2e-284 983.0 720 67.9
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 8.0e-284 980.3 738 66.1
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 1.4e-283 979.5 713 68.3
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 1.8e-283 979.2 726 66.8
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 1.7e-281 972.6 720 66.7
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 2.4e-280 968.8 712 65.6
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 2.0e-279 965.7 707 67.3
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 4.5e-279 964.5 719 66.2
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 1.9e-277 959.1 720 65.6
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 2.5e-277 958.7 734 65.1
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 4.2e-277 958.0 762 63.4
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 5.5e-277 957.6 716 66.1
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 2.7e-276 955.3 704 66.2
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 3.6e-276 954.9 726 65.6
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 8.8e-275 950.3 716 65.8
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 5.7e-274 947.6 725 64.6
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 2.2e-273 945.7 725 64.4
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 6.3e-273 944.1 597 77.4
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 2.5e-269 932.2 740 63.8
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 4.2e-269 931.4 725 66.1
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 4.2e-269 931.4 615 73.3
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 4.2e-269 931.4 722 63.2
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 3.7e-265 918.3 823 57.6
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 1.1e-264 916.8 710 63.9
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 5.6e-261 904.4 687 64.5
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 1.4e-256 889.8 721 63.5
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 3.2e-256 888.6 737 61.9
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 4.3e-253 878.2 717 63.7
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 1.6e-252 876.3 709 61.9
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 3.6e-252 875.2 712 63.2
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 7.5e-250 867.5 714 61.9
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 5.4e-248 861.3 709 61.2
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 5.4e-248 861.3 709 61.2
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 2.7e-247 859.0 716 59.9
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 4.6e-247 858.2 723 61.0
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 2.3e-246 855.9 710 61.3
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 6.6e-246 854.4 713 60.4
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 8.1e-244 847.4 718 61.0
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 2.6e-242 842.4 722 59.8
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 2.8e-236 822.4 724 58.8
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 2.6e-234 815.8 663 61.5
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 6.4e-233 811.2 537 72.4
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 1.1e-232 810.4 612 64.7
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 6.0e-223 778.1 725 57.8
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 5.1e-222 775.0 623 62.4
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 3.4e-202 709.1 473 72.9
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 4.2e-200 702.2 610 58.7
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 6.3e-196 688.3 474 70.0
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 5.0e-193 678.7 459 71.5
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 1.6e-191 673.7 725 51.3
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 1.7e-177 627.1 479 62.8
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 9.7e-173 611.3 456 65.8
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 9.1e-171 604.7 457 64.8
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 6.5e-169 598.6 748 45.2
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 2.2e-164 583.6 736 44.6
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 1.3e-161 574.3 480 60.2
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 1.5e-160 570.9 450 66.4
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 9.5e-152 541.6 432 62.7
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 6.8e-150 535.4 402 65.4
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 2.2e-148 530.4 403 65.3
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 3.3e-144 516.5 691 43.7
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 1.0e-129 468.4 688 41.4
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 5.6e-128 462.6 381 60.4
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 2.4e-123 447.2 751 37.5
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 1.9e-120 437.6 737 38.7
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 4.0e-110 403.3 370 58.1
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 6.9e-110 402.5 294 69.4
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 5.8e-109 399.4 308 63.6
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 3.0e-105 387.1 326 58.0
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.1e-83 315.5 193 79.8
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 6.1e-74 283.1 239 61.5
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 1.4e-73 282.0 208 64.4
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.2e-48 199.1 315 40.6
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 1.7e-44 185.3 150 62.7
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 3.2e-43 181.0 143 67.1
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 4.7e-42 177.2 159 56.6
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 7.5e-40 169.9 103 78.6
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 6.3e-39 166.8 112 70.5
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.4e-38 165.6 162 56.8
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 5.2e-33 147.1 542 26.9
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 1.8e-30 138.7 804 22.6
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 1.3e-28 132.5 131 54.2
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.0e-28 130.6 267 36.3
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.9e-27 128.6 126 57.9
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 5.8e-24 117.1 151 44.4
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.7e-21 108.2 84 64.3
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.6e-20 103.6 99 55.6
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 2.8e-18 98.2 74 63.5
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 1.4e-17 95.9 64 68.8
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 4.4e-16 90.9 115 52.2
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 2.1e-13 82.0 61 65.6
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 3.5e-13 81.3 55 70.9
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 8.6e-12 76.6 56 67.9
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 3.3e-11 74.7 51 72.5
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 7.3e-11 73.6 51 66.7
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 3.6e-10 71.2 51 68.6
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 7.6e-08 63.5 100 40.0


User provided reference genes

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