Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 2.1e-177 625.5 303 100.0
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 3.9e-144 515.0 296 83.1
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.5e-140 503.1 301 79.4
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 8.2e-134 480.7 301 76.7
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 6.9e-133 477.6 292 76.4
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 2.6e-132 475.7 272 82.0
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 5.9e-132 474.6 300 75.7
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 8.5e-131 470.7 292 75.7
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 5.5e-130 468.0 293 74.1
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 9.4e-130 467.2 292 75.0
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 2.7e-129 465.7 293 76.1
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 7.9e-129 464.2 292 75.3
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.0e-128 463.8 297 77.1
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.4e-128 463.4 280 77.9
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.0e-128 462.2 293 75.8
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 8.8e-128 460.7 279 79.9
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.1e-127 460.3 293 75.4
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 5.7e-127 458.0 272 80.1
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 5.7e-127 458.0 305 74.4
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.2e-126 454.1 298 72.1
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.2e-126 454.1 298 72.1
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 2.4e-125 452.6 278 75.2
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 5.3e-125 451.4 266 78.9
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 5.3e-125 451.4 292 74.7
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 5.3e-125 451.4 297 72.4
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 6.9e-125 451.1 291 72.9
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 9.1e-125 450.7 292 74.3
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 2.0e-124 449.5 296 75.0
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 2.6e-124 449.1 293 72.0
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 2.6e-124 449.1 302 71.5
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 5.9e-124 448.0 279 75.3
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 7.7e-124 447.6 294 73.1
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.3e-123 446.8 257 80.9
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 2.2e-123 446.0 285 74.4
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 2.9e-123 445.7 299 72.9
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 6.5e-123 444.5 303 73.3
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.5e-123 444.1 257 80.2
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 1.1e-122 443.7 298 73.2
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.5e-122 442.6 257 79.8
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 2.5e-122 442.6 295 73.2
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 3.2e-122 442.2 280 72.5
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 3.2e-122 442.2 280 76.4
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 4.2e-122 441.8 291 73.2
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 9.4e-122 440.7 279 73.5
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 9.4e-122 440.7 291 72.9
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 1.6e-121 439.9 292 72.6
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 2.1e-121 439.5 294 73.1
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 4.7e-121 438.3 288 72.9
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 7.9e-121 437.6 293 71.7
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 7.9e-121 437.6 294 72.8
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.0e-120 437.2 263 77.9
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 3.0e-120 435.6 292 71.2
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 5.2e-120 434.9 280 74.6
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.1e-119 433.7 282 72.3
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 2.0e-119 433.0 260 78.8
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 2.0e-119 433.0 237 86.9
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 2.0e-119 433.0 284 74.3
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 5.7e-119 431.4 254 78.7
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 2.8e-118 429.1 299 71.6
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 3.7e-118 428.7 287 73.5
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 4.8e-118 428.3 288 70.8
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.3e-118 427.9 262 76.3
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.8e-117 426.4 279 72.4
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 2.4e-117 426.0 278 71.9
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 2.4e-117 426.0 282 73.0
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.2e-116 423.7 279 73.1
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.0e-115 420.6 294 70.1
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.0e-115 420.6 291 68.0
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 1.7e-115 419.9 264 75.4
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.9e-115 419.1 271 73.8
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 6.5e-115 417.9 293 68.3
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 1.1e-114 417.2 271 73.4
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.9e-114 416.4 294 69.0
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 5.5e-114 414.8 259 75.3
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 9.4e-114 414.1 241 79.7
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 1.8e-112 409.8 247 81.8
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 3.3e-111 405.6 297 64.0
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 6.3e-110 401.4 276 68.8
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 5.3e-109 398.3 273 67.8
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 2.9e-107 392.5 280 64.6
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 2.5e-106 389.4 243 78.2
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.0e-105 384.4 262 71.4
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.7e-102 376.7 233 76.8
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.8e-102 375.9 278 62.6
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 4.8e-102 375.2 266 69.5
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.4e-101 373.6 320 59.1
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 3.1e-101 372.5 255 67.5
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 9.1e-101 370.9 380 50.0
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 2.7e-100 369.4 281 65.8
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 2.7e-100 369.4 313 59.4
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 5.0e-99 365.2 268 63.4
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 1.6e-97 360.1 214 78.5
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.7e-94 350.1 285 59.6
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 2.8e-94 349.4 268 60.4
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 8.3e-94 347.8 244 67.2
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 3.1e-93 345.9 261 59.8
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 1.7e-91 340.1 258 62.0
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 2.3e-91 339.7 258 62.0
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 5.0e-91 338.6 256 62.1
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.5e-90 337.0 217 72.4
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.5e-90 337.0 258 61.2
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.5e-90 337.0 258 61.2
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.5e-90 337.0 258 61.2
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 1.9e-90 336.7 259 61.8
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 5.6e-90 335.1 272 60.7
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.2e-89 334.0 238 66.8
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.6e-89 333.6 263 59.7
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 2.8e-89 332.8 206 73.8
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.4e-88 330.5 256 61.3
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 6.8e-88 328.2 277 57.4
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 1.3e-86 323.9 257 59.5
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.7e-86 323.6 204 74.5
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 5.6e-82 308.5 270 60.7
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 2.3e-80 303.1 258 56.6
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.4e-77 293.9 261 55.2
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 4.3e-74 282.3 227 58.1
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 1.2e-71 274.2 223 59.6
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 2.9e-70 269.6 239 55.6
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 2.4e-64 250.0 229 52.4
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 4.9e-62 242.3 265 48.7
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 2.7e-60 236.5 234 50.9
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 5.1e-59 232.3 137 78.1
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 6.9e-56 221.9 189 61.9
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 9.0e-56 221.5 263 44.1
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 4.9e-46 189.1 137 65.7
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 3.7e-41 172.9 301 36.9
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 4.3e-34 149.4 128 53.9
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 6.2e-33 145.6 97 75.3
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 5.5e-29 132.5 220 33.2
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 3.2e-21 106.7 78 62.8
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.2e-20 104.8 90 56.7
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 2.1e-20 104.0 158 36.1
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 6.1e-20 102.4 158 37.3
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 5.1e-19 99.4 105 52.4
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 4.3e-18 96.3 52 80.8
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 1.4e-16 91.3 48 87.5
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 5.0e-14 82.8 43 81.4
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 7.0e-08 62.4 256 25.0
CARHR217150 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.2e-07 61.6 48 58.3
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 8.5e-06 55.5 40 55.0


User provided reference genes

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