Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 2.0e-88 328.9 153 100.0
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 2.7e-32 142.5 138 52.2
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 2.8e-29 132.5 148 50.7
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 3.6e-29 132.1 152 50.0
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 2.6e-27 125.9 147 48.3
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 4.4e-27 125.2 152 48.0
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 7.5e-27 124.4 151 49.0
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.3e-26 123.6 137 49.6
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 6.4e-26 121.3 133 51.1
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 9.2e-25 117.5 130 49.2
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.5e-24 115.5 153 47.1
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.1e-22 110.5 141 46.8
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 2.5e-22 109.4 132 45.5
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 7.3e-22 107.8 142 46.5
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 1.2e-21 107.1 123 47.2
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.2e-21 104.8 168 44.0
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.2e-21 104.8 168 44.0
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.8e-20 103.2 132 46.2
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.2e-20 101.7 137 45.3
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 2.0e-19 99.8 181 39.2
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 3.4e-19 99.0 143 43.4
Peaxi162Scf01184g00133 Petunia axillaris HOM05D003969 ORTHO05D003125 3.4e-19 99.0 140 45.0
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 9.8e-19 97.4 147 42.2
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.3e-18 97.1 150 44.0
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.2e-18 96.3 152 44.7
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.2e-18 96.3 125 46.4
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 2.9e-18 95.9 126 48.4
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 3.7e-18 95.5 137 43.1
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 4.9e-18 95.1 155 39.4
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.1e-17 94.0 154 40.9
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.4e-17 93.6 166 41.0
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.4e-17 93.6 155 40.6
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 3.2e-17 92.4 154 39.6
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.2e-17 92.4 166 40.4
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.1e-17 92.0 155 40.0
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 7.1e-17 91.3 149 36.9
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 7.1e-17 91.3 130 40.8
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 7.1e-17 91.3 130 40.8
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 9.2e-17 90.9 166 41.0
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 9.2e-17 90.9 149 37.6
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.2e-16 90.5 144 43.1
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 2.1e-16 89.7 140 37.9
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 2.7e-16 89.4 130 40.0
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 4.6e-16 88.6 152 40.1
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 1.3e-15 87.0 158 35.4
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.7e-15 86.7 148 39.2
Nitab4.5_0001751g0090 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.7e-15 86.7 118 46.6
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 3.0e-15 85.9 153 37.3
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 3.0e-15 85.9 139 38.1
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 3.9e-15 85.5 132 38.6
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 3.9e-15 85.5 132 38.6
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 5.1e-15 85.1 146 38.4
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 6.6e-15 84.7 142 40.8
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 6.6e-15 84.7 152 38.2
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 8.6e-15 84.3 134 37.3
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 1.5e-14 83.6 154 39.0
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 3.3e-14 82.4 140 37.9
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 3.3e-14 82.4 134 40.3
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 3.3e-14 82.4 157 38.2
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 4.3e-14 82.0 125 40.0
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 5.6e-14 81.6 139 41.0
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 5.6e-14 81.6 152 34.9
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 7.3e-14 81.3 138 38.4
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 7.3e-14 81.3 139 37.4
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 1.2e-13 80.5 148 37.2
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 1.6e-13 80.1 158 34.8
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 2.1e-13 79.7 139 39.6
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.6e-13 79.0 123 35.8
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 4.7e-13 78.6 139 39.6
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 6.2e-13 78.2 146 38.4
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 6.2e-13 78.2 154 36.4
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 8.1e-13 77.8 133 38.3
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 1.1e-12 77.4 144 37.5
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 1.1e-12 77.4 134 38.8
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 1.4e-12 77.0 136 34.6
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 1.8e-12 76.6 100 48.0
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.8e-12 76.6 123 37.4
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 2.3e-12 76.3 130 40.0
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 4.0e-12 75.5 100 49.0
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 5.2e-12 75.1 89 43.8
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 5.2e-12 75.1 152 36.2
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 6.8e-12 74.7 133 34.6
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 8.9e-12 74.3 129 41.1
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 8.9e-12 74.3 76 50.0
Aqoxy7G03536 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 1.2e-11 73.9 142 35.2
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 1.5e-11 73.6 142 40.8
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.5e-11 73.6 149 35.6
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 2.0e-11 73.2 152 37.5
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.6e-11 72.8 77 49.4
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 2.6e-11 72.8 130 36.2
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 2.6e-11 72.8 146 36.3
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 3.4e-11 72.4 128 39.8
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 4.4e-11 72.0 142 35.2
Potri.003G070750 Populus trichocarpa HOM05D008824 ORTHO05D003125 5.8e-11 71.6 141 39.7
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 7.6e-11 71.2 81 42.0
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 7.6e-11 71.2 137 37.2
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 9.9e-11 70.9 132 40.9
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 9.9e-11 70.9 153 37.3
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 9.9e-11 70.9 133 33.8
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.3e-10 70.5 135 37.0
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 1.3e-10 70.5 118 36.4
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.7e-10 70.1 128 42.2
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.7e-10 70.1 91 40.7
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.7e-10 70.1 78 43.6
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 2.2e-10 69.7 142 38.7
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.2e-10 69.7 126 34.9
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 2.2e-10 69.7 125 36.0
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 2.9e-10 69.3 86 48.8
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 2.9e-10 69.3 140 35.7
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 3.8e-10 68.9 163 33.7
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 3.8e-10 68.9 136 37.5
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 4.9e-10 68.6 128 35.9
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 4.9e-10 68.6 128 41.4
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 6.4e-10 68.2 147 38.1
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 1.9e-09 66.6 129 39.5
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.9e-09 66.6 151 35.1
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 1.9e-09 66.6 137 37.2
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 1.9e-09 66.6 127 38.6
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.4e-09 66.2 140 35.0
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.4e-09 66.2 129 33.3
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 2.4e-09 66.2 138 38.4
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 3.2e-09 65.9 138 34.8
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.1e-09 65.5 129 34.9
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 5.4e-09 65.1 127 33.1
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 5.4e-09 65.1 127 33.1
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 7.1e-09 64.7 135 36.3
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 7.1e-09 64.7 107 43.0
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 9.2e-09 64.3 134 33.6
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 9.2e-09 64.3 130 33.8
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 9.2e-09 64.3 159 32.1
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 1.2e-08 63.9 89 40.4
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 1.2e-08 63.9 130 38.5
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.2e-08 63.9 131 33.6
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 1.6e-08 63.5 127 33.1
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 2.1e-08 63.2 148 34.5
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 2.1e-08 63.2 137 32.8
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 2.1e-08 63.2 137 32.8
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 2.1e-08 63.2 135 34.8
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.1e-08 63.2 155 35.5
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 2.7e-08 62.8 72 47.2
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 2.7e-08 62.8 82 43.9
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 2.7e-08 62.8 129 35.7
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 2.7e-08 62.8 108 39.8
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.6e-08 62.0 141 36.2
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 4.6e-08 62.0 139 35.3
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 4.6e-08 62.0 75 42.7
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 7.8e-08 61.2 76 48.7
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 7.8e-08 61.2 117 35.9
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 1.0e-07 60.8 79 44.3
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 1.3e-07 60.5 138 36.2
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 1.3e-07 60.5 145 33.1
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 1.3e-07 60.5 135 31.9
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.7e-07 60.1 130 33.1
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 1.7e-07 60.1 150 29.3
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 2.3e-07 59.7 95 36.8
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.3e-07 59.7 82 45.1
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 2.3e-07 59.7 134 32.8
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 3.0e-07 59.3 131 35.9
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.0e-07 59.3 73 43.8
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.0e-07 59.3 73 43.8
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 3.0e-07 59.3 73 43.8
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.0e-07 59.3 134 28.4
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.1e-07 58.5 143 32.9
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 8.6e-07 57.8 143 32.2
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 8.6e-07 57.8 62 45.2
TWI34G0986 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 8.6e-07 57.8 120 35.0
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 1.1e-06 57.4 77 45.5
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.1e-06 57.4 83 39.8
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 1.5e-06 57.0 64 42.2
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.9e-06 56.6 148 34.5
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.3e-06 55.8 86 38.4
Eucgr.C00437 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.3e-06 55.5 105 38.1
Lalb_Chr24g0402081 Lupinus albus HOM05D013068 ORTHO05D003125 4.3e-06 55.5 131 32.1
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 5.6e-06 55.1 78 43.6
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 5.6e-06 55.1 148 32.4
Lsat_1_v5_gn_5_39780 Lactuca sativa HOM05D003969 ORTHO05D003125 5.6e-06 55.1 146 32.2
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.3e-06 54.7 147 31.3
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 9.6e-06 54.3 88 37.5
Eucgr.C01694 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.6e-06 54.3 130 34.6


User provided reference genes

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