Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 0.0e+00 1227.2 634 100.0
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 1.7e-194 683.3 610 60.3
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.1e-194 681.8 646 58.8
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.2e-190 670.6 647 57.0
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.4e-180 636.3 633 55.9
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 1.7e-178 630.2 643 55.7
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 3.3e-177 625.9 643 53.2
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.6e-176 623.6 644 54.2
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.6e-176 622.5 642 53.9
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 4.0e-175 619.0 693 53.7
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 6.9e-175 618.2 643 53.0
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 2.6e-174 616.3 651 54.1
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 1.0e-165 587.8 640 51.6
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.0e-162 577.8 622 53.1
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 4.3e-161 572.4 643 51.0
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 7.4e-161 571.6 642 50.5
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 2.1e-160 570.1 609 53.7
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.2e-158 564.3 647 50.1
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 2.0e-158 563.5 620 51.8
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.0e-157 561.2 611 52.5
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 3.8e-157 559.3 638 52.2
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 3.8e-157 559.3 638 52.2
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.6e-155 553.9 609 49.6
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 3.5e-155 552.7 640 49.1
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 5.1e-154 548.9 646 50.6
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 6.7e-154 548.5 646 50.2
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.5e-153 547.4 611 51.7
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 4.8e-152 542.3 613 50.2
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 1.4e-151 540.8 479 62.4
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 1.8e-151 540.4 644 49.2
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.8e-151 540.4 643 48.8
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 3.1e-151 539.7 642 49.7
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 4.1e-151 539.3 645 50.7
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 1.2e-150 537.7 612 51.6
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 4.5e-150 535.8 615 50.7
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 7.7e-150 535.0 609 50.9
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 1.3e-149 534.3 647 51.5
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.9e-149 533.1 609 50.7
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 8.5e-149 531.6 643 49.6
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.9e-148 530.4 642 48.8
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.2e-148 528.5 644 48.9
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.9e-146 522.7 617 49.4
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 5.1e-146 522.3 642 48.3
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.1e-145 521.2 637 48.2
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 2.5e-145 520.0 613 49.3
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 5.7e-145 518.8 646 49.8
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 2.2e-144 516.9 619 49.3
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 2.2e-144 516.9 612 49.0
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 4.8e-144 515.8 646 47.8
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 4.8e-144 515.8 637 47.9
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.3e-144 515.4 637 47.7
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 1.4e-143 514.2 609 48.3
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 3.1e-143 513.1 675 46.5
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 1.2e-142 511.1 651 46.5
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 3.4e-142 509.6 609 46.1
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 5.0e-141 505.8 625 48.2
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 8.5e-141 505.0 616 47.9
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 1.4e-140 504.2 607 48.6
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.9e-140 503.8 707 44.8
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 3.2e-140 503.1 609 46.3
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 1.2e-139 501.1 649 45.8
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.3e-138 496.9 643 45.9
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 8.8e-138 495.0 615 46.8
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 3.3e-137 493.0 676 45.1
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 5.7e-137 492.3 645 46.4
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 1.3e-136 491.1 610 49.2
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 1.3e-136 491.1 616 47.6
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 1.7e-136 490.7 611 46.3
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 2.8e-136 490.0 619 48.1
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 4.8e-136 489.2 621 48.3
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 1.8e-135 487.3 638 45.1
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.5e-134 484.2 653 45.0
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 1.1e-132 478.0 613 45.7
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.1e-132 478.0 616 46.4
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.1e-132 478.0 652 46.8
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 5.5e-132 475.7 640 45.8
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 9.4e-132 474.9 608 45.6
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-130 471.1 616 44.5
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 6.7e-130 468.8 612 45.4
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 6.7e-130 468.8 610 46.1
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.5e-129 467.6 614 45.8
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.5e-129 467.6 609 45.6
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 2.6e-129 466.8 608 47.4
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 7.4e-129 465.3 612 44.9
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 9.7e-129 464.9 611 45.8
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.7e-128 463.0 633 43.4
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 4.8e-128 462.6 623 44.8
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 2.4e-127 460.3 612 45.3
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 3.1e-127 459.9 633 44.4
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 9.1e-127 458.4 655 43.1
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 2.6e-126 456.8 613 44.2
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 5.9e-126 455.7 618 44.7
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 1.3e-125 454.5 612 44.9
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 6.5e-125 452.2 633 43.1
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 8.5e-125 451.8 608 44.2
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 8.5e-125 451.8 608 44.2
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.1e-124 451.4 607 43.7
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 3.2e-124 449.9 608 44.4
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 9.4e-124 448.4 609 44.0
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.7e-123 446.8 646 43.8
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 4.7e-123 446.0 613 44.2
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 8.0e-123 445.3 608 44.1
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 1.8e-122 444.1 608 43.8
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.0e-122 443.4 664 41.0
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.5e-121 441.0 664 41.1
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.6e-121 440.3 395 58.7
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 4.4e-121 439.5 633 43.3
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 5.7e-121 439.1 641 45.1
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 2.2e-120 437.2 404 60.4
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 1.2e-118 431.4 609 44.5
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 2.7e-118 430.3 610 44.3
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 5.9e-118 429.1 611 43.7
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.0e-117 428.3 508 49.2
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 2.2e-117 427.2 608 43.3
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 2.9e-117 426.8 608 43.4
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 2.9e-117 426.8 609 44.0
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 6.5e-117 425.6 609 44.0
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 4.2e-116 422.9 625 42.1
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 3.4e-113 413.3 608 42.4
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 9.8e-113 411.8 630 42.4
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 9.8e-113 411.8 620 43.4
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 3.7e-112 409.8 615 41.8
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 9.5e-108 395.2 566 42.6
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.2e-107 394.8 614 41.9
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.9e-101 373.6 502 48.2
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 4.7e-99 366.3 558 43.0
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.4e-95 354.0 386 54.7
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 2.7e-94 350.5 585 39.5
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.1e-91 340.9 353 55.8
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 8.1e-91 339.0 250 65.2
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.5e-89 332.4 322 55.6
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.7e-88 331.3 620 38.4
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.5e-84 318.2 389 51.2
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.3e-84 317.0 380 50.5
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 8.4e-72 275.8 379 46.2
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 5.3e-66 256.5 681 31.9
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.2e-64 251.1 244 55.3
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.4e-63 248.4 326 46.0
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 4.2e-63 246.9 272 50.7
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 1.5e-60 238.4 257 53.7
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.3e-59 235.3 427 41.7
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.5e-57 228.4 563 32.1
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 3.4e-57 227.3 485 36.9
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 4.6e-54 216.9 211 51.7
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 1.3e-53 215.3 623 29.9
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 1.1e-50 205.7 427 34.2
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 1.5e-49 201.8 585 30.3
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.1e-44 185.7 179 55.3
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 3.7e-43 180.6 228 48.7
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.2e-41 175.6 269 43.5
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.4e-39 168.7 219 44.7
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.1e-34 152.5 233 39.9
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 5.5e-31 140.2 132 53.8
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 7.9e-30 136.3 257 37.7
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 2.0e-28 131.7 356 31.5
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 5.3e-26 123.6 278 35.3
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 2.0e-25 121.7 251 36.7
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.7e-25 119.8 95 61.1
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.2e-24 118.2 205 39.5
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 8.5e-24 116.3 263 36.1
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 5.5e-23 113.6 282 33.3
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 5.9e-17 93.6 240 35.4
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 5.9e-17 93.6 81 56.8
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 6.1e-14 83.6 96 39.6
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.8e-13 82.0 68 52.9
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 2.0e-12 78.6 289 26.6
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 2.6e-12 78.2 88 51.1
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.1e-10 72.8 92 45.7
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 3.1e-10 71.2 187 32.6
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.9e-08 64.7 111 42.3
ATR1154G039 Amborella trichopoda HOM05D003892 ORTHO05D004522 3.8e-08 64.3 156 32.1
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.5e-07 61.6 48 60.4


User provided reference genes

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