Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06870 Coffea canephora HOM05D006703 ORTHO05D008389 1.1e-122 443.4 225 100.0
Nitab4.5_0001918g0020 Nicotiana tabacum HOM05D006703 ORTHO05D008389 1.6e-49 200.3 230 50.9
Nitab4.5_0000721g0180 Nicotiana tabacum HOM05D006703 ORTHO05D008389 1.0e-48 197.6 230 50.4
Cfa020082 Carpinus fangiana HOM05D006703 ORTHO05D008389 1.1e-45 187.6 227 48.5
Lj1A1058G53 Lonicera japonica HOM05D006703 ORTHO05D008389 1.1e-45 187.6 230 50.4
Actinidia37767 Actinidia chinensis HOM05D006703 ORTHO05D008389 1.4e-45 187.2 231 49.4
PGSC0003DMG400028230 Solanum tuberosum HOM05D006703 ORTHO05D008389 5.3e-45 185.3 231 46.8
Oeu020165.3 Olea europaea HOM05D006703 ORTHO05D008389 6.9e-45 184.9 248 48.4
Hma1.2p1_0401F.1_g144790 Hydrangea macrophylla HOM05D006703 ORTHO05D008389 3.4e-44 182.6 233 48.5
FAN05G3633 Fragaria x ananassa HOM05D006703 ORTHO05D008389 4.5e-44 182.2 231 48.1
FAN05G2374 Fragaria x ananassa HOM05D006703 ORTHO05D008389 1.3e-43 180.6 231 47.6
Sopen10g032260 Solanum pennellii HOM05D006703 ORTHO05D008389 1.3e-43 180.6 231 46.8
GSVIVG01022605001 Vitis vinifera HOM05D006703 ORTHO05D008389 1.3e-43 180.6 230 48.3
TAR636G3193 Trochodendron aralioides HOM05D004977 ORTHO05D006454 2.2e-43 179.9 223 49.3
MELO3C009564.2 Cucumis melo HOM05D006703 ORTHO05D008389 2.9e-43 179.5 229 48.5
Rhsim03G0062400 Rhododendron simsii HOM05D006703 ORTHO05D008389 2.9e-43 179.5 231 47.2
PGR004G0398 Punica granatum HOM05D006703 ORTHO05D008389 1.1e-42 177.6 229 47.6
FAN09G4763 Fragaria x ananassa HOM05D006703 ORTHO05D008389 1.4e-42 177.2 231 47.2
Potri.016G066800 Populus trichocarpa HOM05D006703 ORTHO05D008389 1.4e-42 177.2 229 48.5
SGA_v2.0_scaffold31G12818 Striga asiatica HOM05D006703 ORTHO05D008389 1.4e-42 177.2 227 48.5
ClCG10G018080 Citrullus lanatus HOM05D006703 ORTHO05D008389 2.5e-42 176.4 229 48.5
HanXRQChr02g0052921 Helianthus annuus HOM05D006703 ORTHO05D008389 2.5e-42 176.4 230 48.3
MSTRG.26583 Avicennia marina HOM05D006703 ORTHO05D008389 5.5e-42 175.3 230 50.0
Sabra16G0068200 Salix brachista HOM05D006703 ORTHO05D008389 5.5e-42 175.3 229 48.5
CsaV3_3G038210 Cucumis sativus L. HOM05D006703 ORTHO05D008389 7.1e-42 174.9 234 48.3
Sed0006927 Sechium edule HOM05D006703 ORTHO05D008389 1.6e-41 173.7 228 46.1
Solyc10g081750.1 Solanum lycopersicum HOM05D006703 ORTHO05D008389 1.6e-41 173.7 232 46.1
Haze_20110 Corylus avellana HOM05D006703 ORTHO05D008389 2.1e-41 173.3 227 44.9
RcHm_v2.0_Chr3g0477081 Rosa chinensis HOM05D006703 ORTHO05D008389 2.1e-41 173.3 231 46.3
vmacro07494 Vaccinium macrocarpon HOM05D006703 ORTHO05D008389 2.7e-41 172.9 293 43.0
FvH4_6g20830 Fragaria vesca HOM05D006703 ORTHO05D008389 4.6e-41 172.2 231 45.9
FAN14G3264 Fragaria x ananassa HOM05D006703 ORTHO05D008389 6.0e-41 171.8 231 45.9
HanXRQChr13g0398671 Helianthus annuus HOM05D006703 ORTHO05D008389 6.0e-41 171.8 234 44.9
RcHm_v2.0_Chr3g0477171 Rosa chinensis HOM05D006703 ORTHO05D008389 7.9e-41 171.4 227 44.5
Prupe.7G090900 Prunus persica HOM05D006703 ORTHO05D008389 1.8e-40 170.2 229 47.6
Eucgr.K01914 Eucalyptus grandis HOM05D006703 ORTHO05D008389 3.0e-40 169.5 235 43.8
MSTRG.19329 Avicennia marina HOM05D006703 ORTHO05D008389 3.9e-40 169.1 231 46.8
MD12G1044300 Malus domestica HOM05D006703 ORTHO05D008389 3.9e-40 169.1 232 46.6
Duzib106G1644 Durio zibethinus HOM05D006703 ORTHO05D008389 5.1e-40 168.7 228 44.7
Nn2g14390 Nelumbo nucifera HOM05D006703 ORTHO05D008389 6.7e-40 168.3 230 44.3
DCAR_013453 Daucus carota HOM05D006703 ORTHO05D008389 1.1e-39 167.5 229 44.1
Gohir.D01G190000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 2.5e-39 166.4 227 42.7
Migut.J00741 Erythranthe guttata HOM05D006703 ORTHO05D008389 4.3e-39 165.6 235 46.0
ECA233G5710 Erigeron canadensis HOM05D006703 ORTHO05D008389 9.6e-39 164.5 241 43.2
Gohir.A01G200000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 9.6e-39 164.5 227 42.7
QL07p026854 Quercus lobata HOM05D006703 ORTHO05D008389 9.6e-39 164.5 238 43.3
SGA_v2.0_scaffold392G50677 Striga asiatica HOM05D006703 ORTHO05D008389 9.6e-39 164.5 227 46.3
AUR62030691 Chenopodium quinoa HOM05D006703 ORTHO05D008389 1.3e-38 164.1 234 45.7
Gorai.002G233800 Gossypium raimondii HOM05D006703 ORTHO05D008389 1.3e-38 164.1 227 42.3
Peaxi162Scf00203g00910 Petunia axillaris HOM05D006703 ORTHO05D008389 1.3e-38 164.1 224 46.4
Lj1g0009334 Lotus japonicus HOM05D006703 ORTHO05D008389 1.6e-38 163.7 237 43.5
Hund14986 Selenicereus undatus HOM05D006703 ORTHO05D008389 2.8e-38 162.9 230 44.8
Manes.08G036200 Manihot esculenta HOM05D006703 ORTHO05D008389 3.7e-38 162.5 230 43.9
Thecc.05G108700 Theobroma cacao HOM05D006703 ORTHO05D008389 4.8e-38 162.2 230 43.5
Sed0010784 Sechium edule HOM05D006703 ORTHO05D008389 6.3e-38 161.8 230 45.2
TWI74G0187 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 6.3e-38 161.8 241 44.8
Lalb_Chr01g0017771 Lupinus albus HOM05D006703 ORTHO05D008389 8.2e-38 161.4 231 43.7
MD14G1043200 Malus domestica HOM05D006703 ORTHO05D008389 1.1e-37 161.0 230 44.8
TWI77G0507 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 1.4e-37 160.6 230 43.5
COL.COLO4_29515 Corchorus olitorius HOM05D006703 ORTHO05D008389 2.4e-37 159.8 227 43.6
Medtr7g106660 Medicago truncatula HOM05D006703 ORTHO05D008389 3.1e-37 159.5 235 42.1
CiPaw.10G019700 Carya illinoinensis HOM05D006703 ORTHO05D008389 4.1e-37 159.1 229 41.9
EL10Ac5g11822 Beta vulgaris HOM05D006703 ORTHO05D008389 5.3e-37 158.7 227 41.9
Ah.12g059450 Amaranthus hybridus HOM05D001890 ORTHO05D003442 1.2e-36 157.5 233 42.9
TPR.G34442 Trifolium pratense HOM05D006703 ORTHO05D008389 1.2e-36 157.5 238 40.3
Manes.09G042800 Manihot esculenta HOM05D006703 ORTHO05D008389 1.5e-36 157.1 230 45.2
FAN02G3199 Fragaria x ananassa HOM05D006703 ORTHO05D008389 2.0e-36 156.8 192 47.4
CANSAT64G1940 Cannabis sativa HOM05D006703 ORTHO05D008389 2.6e-36 156.4 233 44.2
CiPaw.09G023100 Carya illinoinensis HOM05D006703 ORTHO05D008389 4.5e-36 155.6 229 42.4
Hund10833 Selenicereus undatus HOM05D006703 ORTHO05D008389 5.9e-36 155.2 229 42.4
EL10Ac9g21006 Beta vulgaris HOM05D006703 ORTHO05D008389 1.0e-35 154.5 227 41.9
Ca_09072_v3 Cicer arietinum L. HOM05D006703 ORTHO05D008389 1.7e-35 153.7 234 40.2
Duzib093G0046 Durio zibethinus HOM05D006703 ORTHO05D008389 1.7e-35 153.7 207 44.4
PSO017G1234 Papaver somniferum HOM05D006703 ORTHO05D008389 4.2e-34 149.1 234 41.9
Phvul.001G197500 Phaseolus vulgaris HOM05D006703 ORTHO05D008389 7.2e-34 148.3 228 40.8
Psat3g028120 Pisum sativum HOM05D006703 ORTHO05D008389 7.2e-34 148.3 234 41.0
AUR62036335 Chenopodium quinoa HOM05D006703 ORTHO05D008389 1.2e-33 147.5 184 48.4
Sc22g0003150 Simmondsia chinensis HOM05D006703 ORTHO05D008389 2.1e-33 146.7 212 42.5
Atru.chr8.1299 Acer truncatum HOM05D006703 ORTHO05D008389 2.3e-32 143.3 201 44.3
arahy.Tifrunner.gnm1.ann1.8DDT0E Arachis hypogaea HOM05D006703 ORTHO05D008389 3.0e-32 142.9 244 39.3
arahy.Tifrunner.gnm1.ann1.W58RTV Arachis hypogaea HOM05D006703 ORTHO05D008389 3.0e-32 142.9 244 39.3
CARHR130150 Cardamine hirsuta HOM05D006703 ORTHO05D008389 1.9e-31 140.2 231 38.5
Aa31LG5G21040 Aethionema arabicum HOM05D006703 ORTHO05D008389 2.5e-31 139.8 233 37.3
Thhalv10017281m.g Eutrema salsugineum HOM05D006703 ORTHO05D008389 2.5e-31 139.8 234 38.0
Glyma.03G204000 Glycine max HOM05D006703 ORTHO05D008389 2.8e-30 136.3 232 38.4
Sp4g18150 Schrenkiella parvula HOM05D006703 ORTHO05D008389 2.8e-30 136.3 235 37.0
VMungo1383G2242 Vigna mungo HOM05D001890 ORTHO05D003442 2.8e-30 136.3 228 38.2
C03p23140 Brassica napus HOM05D006703 ORTHO05D008389 6.3e-30 135.2 232 37.1
AT2G35900 Arabidopsis thaliana HOM05D006703 ORTHO05D008389 8.2e-30 134.8 236 37.3
BcaB06g28891 Brassica carinata HOM05D006703 ORTHO05D008389 8.2e-30 134.8 239 38.9
MBI05_g29094_MAGBIO Magnolia biondii HOM05D006703 ORTHO05D008389 8.2e-30 134.8 195 41.0
AL4G32000 Arabidopsis lyrata HOM05D006703 ORTHO05D008389 1.8e-29 133.7 236 38.1
BraA03t11234Z Brassica rapa HOM05D006703 ORTHO05D008389 1.8e-29 133.7 232 36.6
A03p19820 Brassica napus HOM05D006703 ORTHO05D008389 5.3e-29 132.1 232 36.6
BolC4t27966H Brassica oleracea HOM05D006703 ORTHO05D008389 5.3e-29 132.1 238 39.1
BraA04t18236Z Brassica rapa HOM05D006703 ORTHO05D008389 1.5e-28 130.6 238 38.7
Carub.0004s1765 Capsella rubella HOM05D006703 ORTHO05D008389 1.5e-28 130.6 234 36.8
BcaC01g05692 Brassica carinata HOM05D006703 ORTHO05D008389 3.4e-28 129.4 231 36.4
BolC3t14715H Brassica oleracea HOM05D006703 ORTHO05D008389 3.4e-28 129.4 231 36.4
ATR0697G151 Amborella trichopoda HOM05D006703 ORTHO05D008389 4.5e-28 129.0 226 35.0
BcaC02g07656 Brassica carinata HOM05D006703 ORTHO05D008389 4.5e-28 129.0 238 37.4
A04p27380 Brassica napus HOM05D006703 ORTHO05D008389 7.7e-28 128.3 239 37.7
C04p64910 Brassica napus HOM05D006703 ORTHO05D008389 2.2e-27 126.7 238 37.0
Aqoxy1G00585 Aquilegia oxysepala HOM05D006703 ORTHO05D008389 2.9e-27 126.3 234 38.9
CDE10G0766 Ceratophyllum demersum HOM05D006703 ORTHO05D008389 2.5e-26 123.2 163 42.3
THA.LOC104823512 Tarenaya hassleriana HOM05D006703 ORTHO05D008389 2.5e-26 123.2 232 34.5
Os01g0771200 Oryza sativa ssp. japonica HOM05D006703 ORTHO05D008389 5.5e-26 122.1 191 41.9
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 4.6e-25 119.0 135 51.9
Zm00001eb151930 Zea mays HOM05D006703 ORTHO05D008389 7.9e-25 118.2 178 39.3
Actinidia03862 Actinidia chinensis HOM05D006703 ORTHO05D008389 1.4e-24 117.5 127 55.1
unitig_749.g14212 Utricularia gibba HOM05D006703 ORTHO05D008389 9.7e-23 111.3 178 39.9
Actinidia03970 Actinidia chinensis HOM05D006703 ORTHO05D008389 8.2e-22 108.2 195 40.5
Oeu045018.1 Olea europaea HOM05D006703 ORTHO05D008389 2.0e-15 87.0 118 43.2
SEGI_14783 Sequoiadendron giganteum HOM05D000064 ORTHO05D008389 1.9e-10 70.5 183 26.8
SHI28311 Sapria himalayana HOM05D006703 ORTHO05D008389 1.6e-09 67.4 150 34.0
CDE10G0313 Ceratophyllum demersum HOM05D006703 ORTHO05D001378 2.7e-09 66.6 157 31.8
SEGI_41401 Sequoiadendron giganteum HOM05D006703 ORTHO05D008389 4.7e-09 65.9 47 61.7
Dinv16712 Davidia involucrata HOM05D006703 ORTHO05D008389 6.7e-08 62.0 69 50.7


User provided reference genes

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