Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 3.0e-165 585.1 297 100.0
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 3.3e-79 299.3 259 63.7
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 2.9e-75 286.2 301 55.8
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 2.5e-74 283.1 298 55.7
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 5.5e-74 282.0 273 58.6
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 4.6e-73 278.9 298 55.7
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 1.8e-72 276.9 311 52.1
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 8.7e-72 274.6 236 60.6
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 1.1e-71 274.2 212 66.0
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 1.1e-71 274.2 239 61.5
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 7.4e-71 271.6 212 64.2
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 9.7e-71 271.2 228 61.4
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 9.7e-71 271.2 268 54.1
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 1.3e-70 270.8 274 53.6
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 1.6e-70 270.4 233 61.8
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 2.2e-70 270.0 238 62.2
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 3.7e-70 269.2 234 61.1
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 4.8e-70 268.9 205 65.9
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 4.8e-70 268.9 237 61.6
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 4.8e-70 268.9 269 57.2
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 4.8e-70 268.9 224 63.4
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 8.2e-70 268.1 303 51.8
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 1.8e-69 266.9 234 60.7
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 2.4e-69 266.5 301 51.8
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 3.1e-69 266.2 201 67.2
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 4.1e-69 265.8 236 61.9
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 4.1e-69 265.8 269 54.3
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 5.3e-69 265.4 299 53.2
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 5.3e-69 265.4 265 56.2
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 5.3e-69 265.4 201 66.7
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 6.9e-69 265.0 302 51.7
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 6.9e-69 265.0 203 64.5
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 9.0e-69 264.6 258 55.0
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 1.2e-68 264.2 201 66.7
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 1.5e-68 263.8 258 55.8
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 2.6e-68 263.1 210 64.8
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 3.4e-68 262.7 263 56.7
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 3.4e-68 262.7 203 67.5
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 4.5e-68 262.3 256 59.4
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 4.5e-68 262.3 235 56.2
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 4.5e-68 262.3 254 56.7
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 2.2e-67 260.0 236 57.2
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 2.2e-67 260.0 273 54.9
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 3.8e-67 259.2 205 64.4
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 6.5e-67 258.5 178 69.7
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 8.5e-67 258.1 276 53.6
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 1.1e-66 257.7 307 51.1
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 1.4e-66 257.3 291 53.3
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 1.9e-66 256.9 258 54.7
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 1.9e-66 256.9 203 63.5
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 3.2e-66 256.1 227 59.0
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 9.4e-66 254.6 200 61.5
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 1.2e-65 254.2 265 53.2
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 1.2e-65 254.2 287 50.5
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 2.7e-65 253.1 191 67.5
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 3.6e-65 252.7 209 60.8
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 1.0e-64 251.1 259 56.0
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 1.4e-64 250.8 204 59.8
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.4e-64 250.8 255 54.5
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.3e-64 250.0 200 61.5
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.1e-63 247.7 242 55.4
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 1.5e-63 247.3 198 64.6
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 1.5e-63 247.3 328 47.6
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 2.5e-63 246.5 221 56.1
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 3.3e-63 246.1 271 50.2
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 4.3e-63 245.7 268 51.5
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 7.4e-63 245.0 191 66.5
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 9.7e-63 244.6 219 57.1
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 1.3e-62 244.2 280 51.4
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 2.2e-62 243.4 214 58.4
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 3.7e-62 242.7 200 63.0
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 8.2e-62 241.5 198 60.6
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 8.2e-62 241.5 218 56.9
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 1.4e-61 240.7 271 54.6
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 2.4e-61 240.0 192 60.4
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 3.1e-61 239.6 237 54.0
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 6.9e-61 238.4 204 57.8
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 2.0e-60 236.9 204 57.4
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 1.3e-59 234.2 205 57.1
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 1.7e-59 233.8 204 56.9
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 1.7e-59 233.8 204 56.9
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 2.9e-59 233.0 191 62.3
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 3.8e-59 232.6 204 58.8
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 6.5e-59 231.9 299 43.8
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 1.9e-58 230.3 295 45.8
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 1.6e-57 227.3 222 55.9
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 1.6e-57 227.3 154 74.0
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 2.1e-57 226.9 204 57.4
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 6.1e-57 225.3 208 57.7
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 1.1e-53 214.5 167 65.3
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 4.5e-52 209.1 236 53.0
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 7.7e-52 208.4 297 45.5
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 2.9e-51 206.5 265 47.9
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 6.5e-51 205.3 209 51.7
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 4.2e-50 202.6 153 67.3
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 2.1e-49 200.3 157 61.8
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 6.1e-49 198.7 170 60.6
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 1.1e-47 194.5 237 50.2
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 1.1e-47 194.5 177 57.6
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 3.3e-47 193.0 162 58.6
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.7e-46 190.7 143 66.4
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 7.7e-44 181.8 133 67.7
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.0e-43 181.4 192 53.6
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 1.9e-42 177.2 161 59.6
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 4.4e-39 166.0 215 45.6
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.7e-38 164.1 154 57.1
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 2.4e-37 160.2 135 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 3.1e-37 159.8 202 43.1
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 9.1e-37 158.3 140 57.9
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 2.2e-35 153.7 114 64.9
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 2.3e-32 143.7 199 43.2
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 2.2e-30 137.1 230 37.4
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.6e-23 113.6 179 38.0
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.6e-23 113.6 179 38.0
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 4.4e-23 112.8 135 51.1
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 1.4e-21 107.8 87 64.4
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 4.5e-20 102.8 100 60.0
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 1.5e-18 97.8 163 42.3
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 6.1e-17 92.4 123 37.4
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 6.8e-16 89.0 238 31.9
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 9.2e-13 78.6 103 45.6
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 2.7e-12 77.0 138 35.5
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 8.0e-09 65.5 106 41.5
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 3.7e-06 56.6 64 57.8


User provided reference genes

Program Settings