Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 3.4e-74 281.6 142 100.0
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 4.5e-66 254.6 142 90.8
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 7.2e-56 220.7 123 87.0
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 9.3e-56 220.3 123 87.0
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 7.9e-55 217.2 137 78.8
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 1.3e-54 216.5 123 85.4
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 5.1e-54 214.5 119 89.1
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 8.7e-54 213.8 123 83.7
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 1.5e-53 213.0 129 78.3
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.5e-53 213.0 122 86.1
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.5e-53 213.0 133 78.2
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.5e-53 212.2 130 79.2
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 3.3e-53 211.8 123 83.7
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 5.7e-53 211.1 132 78.0
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.3e-52 209.9 128 80.5
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 2.8e-52 208.8 124 82.3
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 2.8e-52 208.8 138 74.6
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 3.7e-52 208.4 127 80.3
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 3.7e-52 208.4 122 83.6
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 4.8e-52 208.0 128 79.7
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.8e-52 208.0 130 73.8
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.1e-51 206.8 122 83.6
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.1e-51 206.8 126 79.4
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.1e-51 206.8 122 83.6
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.4e-51 206.5 124 80.6
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 4.1e-51 204.9 129 78.3
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 4.1e-51 204.9 128 77.3
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 5.3e-51 204.5 125 80.8
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 1.2e-50 203.4 126 76.2
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.2e-50 203.4 126 78.6
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.2e-50 203.4 122 82.0
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-50 203.4 122 82.0
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-50 203.4 122 82.0
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 2.0e-50 202.6 125 76.0
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 2.0e-50 202.6 118 83.9
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.6e-50 202.2 126 78.6
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.6e-50 202.2 122 81.1
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 4.5e-50 201.4 139 69.8
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 4.5e-50 201.4 122 81.1
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 4.5e-50 201.4 122 80.3
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 5.9e-50 201.1 127 77.2
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 7.7e-50 200.7 127 74.8
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.0e-49 200.3 124 77.4
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.0e-49 200.3 136 73.5
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.7e-49 199.5 119 82.4
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 5.0e-49 198.0 122 78.7
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 6.5e-49 197.6 122 78.7
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 6.5e-49 197.6 126 74.6
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 6.5e-49 197.6 121 79.3
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.1e-48 196.8 124 75.8
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.1e-48 196.8 122 79.5
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.9e-48 196.1 129 74.4
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 3.2e-48 195.3 127 74.0
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 3.2e-48 195.3 121 76.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.2e-48 194.9 122 77.0
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.2e-48 194.9 141 68.8
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.5e-48 194.5 122 77.0
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 5.5e-48 194.5 122 77.0
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 5.5e-48 194.5 129 77.5
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.2e-48 194.1 134 71.6
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 9.4e-48 193.7 129 73.6
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 9.4e-48 193.7 133 72.2
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.2e-47 193.4 129 73.6
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.2e-47 193.4 120 79.2
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.2e-47 193.4 123 75.6
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.6e-47 191.8 123 75.6
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 4.6e-47 191.4 129 72.9
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.1e-47 191.0 133 71.4
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.0e-46 190.3 123 73.2
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 2.3e-46 189.1 122 77.0
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 5.1e-46 188.0 127 71.7
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 5.1e-46 188.0 119 73.9
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.1e-45 186.8 123 72.4
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.1e-45 186.8 127 72.4
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.6e-45 185.7 122 73.8
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 2.6e-45 185.7 123 73.2
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 5.7e-45 184.5 120 74.2
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.7e-44 183.0 130 69.2
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.2e-44 182.6 125 68.8
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.2e-44 182.6 122 68.9
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.8e-44 181.4 123 72.4
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 6.3e-44 181.0 113 76.1
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 8.2e-44 180.6 126 73.0
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.1e-43 180.3 129 69.8
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 2.4e-43 179.1 127 67.7
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 3.1e-43 178.7 121 69.4
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 5.3e-43 177.9 123 70.7
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 5.3e-43 177.9 122 68.0
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.2e-42 176.8 120 72.5
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 5.9e-42 174.5 127 69.3
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 2.9e-41 172.2 127 63.8
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 3.8e-41 171.8 119 67.2
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 3.8e-41 171.8 128 62.5
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.8e-41 171.8 122 67.2
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.0e-41 171.4 122 68.0
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.1e-40 170.2 134 63.4
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.1e-40 170.2 123 66.7
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.4e-40 169.9 126 61.9
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.9e-40 169.5 138 59.4
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.9e-40 169.5 119 67.2
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 2.5e-40 169.1 137 59.1
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 3.2e-40 168.7 128 61.7
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 3.2e-40 168.7 126 61.9
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 4.2e-40 168.3 109 78.0
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 5.5e-40 167.9 127 59.8
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 9.4e-40 167.2 122 68.9
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 9.4e-40 167.2 122 68.0
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 9.4e-40 167.2 113 72.6
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 9.4e-40 167.2 123 65.9
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.6e-39 166.4 137 58.4
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.6e-39 166.4 126 64.3
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.1e-39 166.0 119 65.5
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 2.1e-39 166.0 119 66.4
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 3.6e-39 165.2 122 63.1
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.6e-39 165.2 119 68.9
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.7e-39 164.9 97 82.5
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.7e-39 164.9 139 56.8
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 6.1e-39 164.5 120 64.2
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 6.1e-39 164.5 130 60.0
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 7.9e-39 164.1 138 60.9
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 1.8e-38 162.9 135 63.7
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.3e-38 162.5 122 67.2
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 5.2e-38 161.4 117 65.0
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.1e-37 160.2 126 62.7
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 1.1e-37 160.2 121 63.6
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 7.4e-37 157.5 107 68.2
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.3e-36 156.8 140 57.9
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.2e-36 156.0 123 59.3
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 2.2e-36 156.0 122 62.3
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.2e-36 156.0 139 55.4
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 3.7e-36 155.2 132 58.3
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 6.3e-36 154.5 118 62.7
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 6.3e-36 154.5 118 62.7
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 6.3e-36 154.5 118 62.7
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.8e-35 152.9 118 61.9
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.8e-35 152.9 118 61.9
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 1.8e-35 152.9 131 61.1
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 2.4e-35 152.5 118 62.7
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 2.4e-35 152.5 119 61.3
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.2e-34 150.2 118 61.9
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-34 149.4 124 58.1
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.5e-34 148.3 125 57.6
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 4.5e-34 148.3 118 61.0
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 4.5e-34 148.3 118 61.0
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 4.5e-34 148.3 119 57.1
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 5.9e-34 147.9 124 64.5
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.0e-33 147.1 125 57.6
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.3e-33 146.7 119 56.3
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 2.9e-33 145.6 125 56.0
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 3.8e-33 145.2 127 58.3
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 3.8e-33 145.2 116 59.5
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 5.0e-33 144.8 124 54.8
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.5e-33 144.4 126 56.3
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 8.5e-33 144.1 100 70.0
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 5.5e-32 141.4 121 57.9
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.3e-29 132.1 119 52.1
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.2e-28 129.4 119 53.8
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.5e-24 116.7 79 69.6
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.8e-22 109.8 64 81.2
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.3e-22 109.4 65 80.0
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.3e-22 109.4 65 80.0
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.6e-21 105.9 64 76.6
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 1.1e-19 100.5 65 78.5
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 4.1e-19 98.6 62 80.6
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.2e-18 97.1 81 69.1
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 3.5e-18 95.5 62 77.4
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 5.9e-18 94.7 57 80.7
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.5e-16 89.4 55 69.1
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 3.3e-16 89.0 112 40.2
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.6e-15 86.7 58 77.6
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.0e-15 84.3 54 70.4
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 5.2e-14 81.6 65 61.5
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 6.8e-14 81.3 123 38.2
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 8.9e-14 80.9 62 54.8
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.2e-13 80.5 84 52.4
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 9.8e-13 77.4 67 59.7
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 8.6e-09 64.3 63 49.2
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 6.1e-07 58.2 35 74.3
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 1.4e-06 57.0 34 70.6


User provided reference genes

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