Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 1.1e-192 676.4 328 100.0
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 2.1e-159 565.8 312 85.6
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 1.5e-157 559.7 312 84.6
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 8.2e-156 553.9 307 85.3
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 1.1e-155 553.5 313 83.4
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 1.4e-155 553.1 309 83.2
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 3.1e-155 552.0 314 82.2
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 4.1e-155 551.6 305 85.2
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 5.3e-155 551.2 310 83.2
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 2.7e-154 548.9 313 81.5
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 3.5e-154 548.5 308 81.8
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 1.0e-153 547.0 310 82.9
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.3e-153 546.6 311 82.3
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 2.2e-153 545.8 308 82.5
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 2.9e-153 545.4 315 81.6
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 5.0e-153 544.7 309 80.6
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 5.0e-153 544.7 307 82.7
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 6.5e-153 544.3 308 81.8
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 6.5e-153 544.3 313 81.2
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 6.5e-153 544.3 313 81.2
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 1.1e-152 543.5 307 82.7
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 1.1e-152 543.5 308 82.8
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 1.5e-152 543.1 309 80.9
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 1.9e-152 542.7 310 81.0
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 2.5e-152 542.3 308 82.5
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 4.2e-152 541.6 310 82.3
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 7.2e-152 540.8 309 81.9
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 9.4e-152 540.4 310 81.0
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 1.6e-151 539.7 308 81.8
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.6e-151 539.7 311 80.1
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.6e-151 538.5 309 80.9
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 4.7e-151 538.1 310 80.3
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 4.7e-151 538.1 308 80.8
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 6.1e-151 537.7 304 81.9
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 6.1e-151 537.7 310 81.0
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 1.0e-150 537.0 310 80.6
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 1.0e-150 537.0 311 81.4
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.8e-150 536.2 309 80.6
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 1.8e-150 536.2 310 81.3
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 5.2e-150 534.6 310 79.7
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 6.8e-150 534.3 309 80.9
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 1.5e-149 533.1 312 79.2
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 2.0e-149 532.7 309 80.3
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 5.7e-149 531.2 309 80.3
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 5.7e-149 531.2 311 79.4
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 9.8e-149 530.4 312 79.2
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 1.3e-148 530.0 312 78.5
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 1.7e-148 529.6 309 79.9
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 2.2e-148 529.3 297 84.2
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 2.2e-148 529.3 298 82.9
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 3.7e-148 528.5 309 79.3
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 4.8e-148 528.1 310 78.7
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 4.8e-148 528.1 308 79.9
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 4.8e-148 528.1 308 81.5
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 6.3e-148 527.7 304 80.3
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 2.4e-147 525.8 309 79.6
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 3.1e-147 525.4 313 78.6
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 4.1e-147 525.0 312 78.2
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 5.4e-147 524.6 298 82.9
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 5.4e-147 524.6 308 78.9
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 9.1e-147 523.9 311 80.7
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 9.1e-147 523.9 308 79.5
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.0e-146 522.7 304 79.6
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 5.9e-146 521.2 312 76.9
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 7.7e-146 520.8 299 80.6
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 1.3e-145 520.0 299 80.6
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 2.9e-145 518.8 304 78.9
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 2.9e-145 518.8 291 83.2
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 5.0e-145 518.1 322 76.4
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 5.0e-145 518.1 311 78.5
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 1.5e-144 516.5 322 76.1
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.5e-144 516.5 308 77.9
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 2.5e-144 515.8 322 75.8
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 1.6e-143 513.1 300 79.3
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 8.0e-143 510.8 303 81.5
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 4.4e-141 505.0 370 66.8
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 7.5e-141 504.2 312 77.9
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 9.8e-141 503.8 320 76.6
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.7e-140 503.1 299 78.9
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 2.9e-137 492.3 301 75.7
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 8.6e-137 490.7 277 84.1
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 4.3e-136 488.4 290 77.2
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 7.3e-136 487.6 315 74.9
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 9.5e-136 487.3 311 72.3
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 1.1e-131 473.8 265 84.2
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 9.2e-131 470.7 306 70.6
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 1.2e-130 470.3 254 87.4
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 2.0e-130 469.5 334 68.6
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 2.3e-129 466.1 251 86.1
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 2.3e-129 466.1 307 73.9
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 8.6e-129 464.2 313 67.7
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.3e-128 462.2 262 82.1
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.6e-127 459.9 262 81.7
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.3e-126 456.1 262 81.7
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.4e-125 452.2 263 80.6
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 1.6e-122 443.4 291 69.4
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 1.0e-121 440.7 308 68.8
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 1.0e-121 440.7 299 72.2
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 2.9e-116 422.5 299 71.6
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 1.1e-115 420.6 258 77.9
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 9.2e-115 417.5 287 66.2
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 6.0e-114 414.8 269 75.1
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 2.2e-108 396.4 218 85.3
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 4.9e-108 395.2 235 79.1
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.2e-101 374.0 312 57.1
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 4.4e-101 372.1 311 57.6
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 3.9e-97 359.0 210 80.5
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 5.1e-89 332.0 302 54.0
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 2.1e-87 326.6 323 49.8
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 6.2e-79 298.5 204 67.2
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.3e-76 290.8 179 75.4
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 2.2e-76 290.0 295 50.2
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 2.9e-76 289.7 288 46.9
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 4.2e-75 285.8 160 81.9
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.5e-69 265.8 165 74.5
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 4.6e-66 255.8 145 80.7
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 6.1e-66 255.4 165 75.8
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 6.5e-60 235.3 126 87.3
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 5.5e-59 232.3 182 64.3
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 1.8e-57 227.3 184 59.8
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 2.2e-52 210.3 108 94.4
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 2.9e-52 209.9 119 78.2
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 5.5e-51 205.7 132 70.5
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 1.0e-49 201.4 119 78.2
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.1e-48 198.0 124 79.8
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 9.1e-46 188.3 107 85.0
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 6.3e-39 165.6 118 65.3
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 2.2e-36 157.1 107 66.4
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 1.1e-35 154.8 172 50.6
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.0e-33 146.7 317 34.4
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 6.3e-31 139.0 318 34.0
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.3e-31 138.7 102 66.7
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 7.0e-30 135.6 73 86.3
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 7.8e-21 105.5 303 29.7
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.7e-20 104.4 117 52.1
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 8.6e-20 102.1 64 78.1
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 1.1e-19 101.7 69 68.1
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 3.3e-19 100.1 69 68.1
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.4e-17 94.7 97 52.6
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 1.6e-13 81.3 165 30.3
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 2.0e-13 80.9 55 67.3
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 3.3e-11 73.6 46 69.6
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 9.5e-11 72.0 273 26.0
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.2e-10 71.6 276 26.1
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.1e-10 70.9 280 23.2
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 3.6e-10 70.1 271 26.6
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 8.0e-10 68.9 42 73.8
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 8.0e-10 68.9 42 73.8
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-09 67.8 274 24.1
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.8e-09 67.8 275 25.8
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 2.3e-09 67.4 42 71.4
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 3.1e-09 67.0 295 25.8
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.2e-08 65.1 210 26.7
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-08 64.7 274 24.1
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-08 64.7 271 23.6
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-08 64.7 271 23.6
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-08 64.7 274 24.1
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 2.6e-08 63.9 274 24.1
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.5e-08 62.4 210 26.2
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 9.8e-08 62.0 78 46.2
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 9.8e-08 62.0 221 27.1
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.7e-07 61.2 288 25.3
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.4e-07 59.3 206 25.7
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 6.4e-07 59.3 281 24.2
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 6.4e-07 59.3 297 24.2
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 6.4e-07 59.3 200 26.0
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 2.4e-06 57.4 293 23.2
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 4.1e-06 56.6 204 27.5
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 7.0e-06 55.8 124 33.9


User provided reference genes

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