Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 3.7e-160 568.2 284 100.0
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 3.2e-87 325.9 200 86.5
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 2.0e-86 323.2 192 87.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 3.5e-86 322.4 192 87.0
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 7.8e-86 321.2 192 85.9
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 7.8e-86 321.2 192 87.0
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.5e-84 317.0 192 83.3
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.9e-84 316.6 192 85.9
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.9e-84 316.6 192 85.9
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.2e-83 313.9 192 84.4
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.8e-83 312.8 196 80.6
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.1e-82 310.8 192 81.8
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 3.1e-82 309.3 196 79.6
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.2e-81 307.4 192 82.8
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.2e-81 307.4 192 80.7
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.5e-81 307.0 192 80.7
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 2.0e-81 306.6 198 79.8
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 2.0e-81 306.6 192 81.8
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 3.4e-81 305.8 192 80.7
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 5.8e-81 305.1 192 81.8
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.7e-80 303.5 196 78.6
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 2.2e-80 303.1 192 81.2
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.7e-80 302.4 192 80.2
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.9e-80 302.0 190 82.6
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 1.1e-79 300.8 195 75.9
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.4e-79 299.7 200 76.0
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 4.1e-79 298.9 199 76.9
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.4e-79 298.5 192 79.2
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 9.2e-79 297.7 192 78.6
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.2e-78 297.4 192 79.2
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.2e-78 297.4 192 78.6
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.2e-78 297.4 192 78.1
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.2e-78 297.4 193 78.8
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 4.6e-78 295.4 192 78.6
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 6.0e-78 295.0 196 76.5
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 6.0e-78 295.0 192 79.7
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.8e-78 294.7 192 78.6
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.0e-77 294.3 198 77.8
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.3e-77 293.9 192 78.1
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.1e-77 292.0 192 77.6
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 6.6e-77 291.6 192 78.1
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 8.6e-77 291.2 192 77.6
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-76 290.8 192 77.6
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.1e-76 290.8 192 77.1
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.1e-76 290.8 192 77.1
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.5e-76 290.4 247 63.2
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.5e-76 289.7 192 77.1
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.5e-76 289.7 192 77.1
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.3e-76 289.3 192 77.1
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 7.3e-76 288.1 192 75.0
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.2e-75 287.3 192 76.0
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.2e-75 287.3 187 78.6
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 2.1e-75 286.6 192 74.5
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.8e-75 286.2 192 74.5
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 4.7e-75 285.4 188 75.0
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.3e-74 283.1 176 81.2
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 6.8e-74 281.6 192 76.6
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 1.5e-73 280.4 207 70.0
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 3.4e-73 279.3 192 76.0
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 4.4e-73 278.9 192 75.5
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 5.8e-73 278.5 192 71.9
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 2.2e-72 276.6 194 73.7
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 2.2e-72 276.6 192 72.4
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 3.7e-72 275.8 192 71.4
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.4e-71 273.9 280 53.9
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 2.4e-71 273.1 192 72.4
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.6e-70 270.4 185 74.6
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.6e-70 270.4 187 75.4
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 2.7e-70 269.6 238 61.8
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 2.7e-70 269.6 185 74.6
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 4.6e-70 268.9 198 70.2
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.3e-69 267.3 194 72.2
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.7e-69 266.9 193 69.9
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.7e-69 266.9 197 68.5
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 2.3e-69 266.5 192 70.8
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 2.3e-69 266.5 192 69.3
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 5.1e-69 265.4 193 69.9
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 5.1e-69 265.4 192 70.3
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.1e-68 264.2 192 71.9
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.5e-68 263.1 192 70.8
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 4.3e-68 262.3 193 69.9
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 9.6e-68 261.2 194 70.6
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.6e-67 260.4 194 71.1
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.6e-67 260.4 193 69.9
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 6.2e-67 258.5 192 69.8
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 8.1e-67 258.1 192 66.1
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 8.9e-66 254.6 177 70.6
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 2.0e-65 253.4 192 68.2
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 2.2e-64 250.0 192 70.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 6.4e-64 248.4 192 66.7
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 6.4e-64 248.4 192 66.7
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 6.4e-64 248.4 192 66.7
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 1.1e-63 247.7 192 66.7
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 1.1e-63 247.7 192 66.7
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 3.2e-63 246.1 213 63.8
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 3.2e-63 246.1 234 56.8
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 2.7e-62 243.0 234 56.8
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 2.7e-62 243.0 192 62.0
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 7.8e-62 241.5 195 64.6
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 5.1e-61 238.8 192 66.7
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.9e-60 236.9 201 63.7
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 3.6e-59 232.6 192 63.0
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.1e-58 231.1 249 53.0
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.2e-57 227.6 150 73.3
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 7.6e-57 224.9 199 57.8
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 7.6e-57 224.9 142 79.6
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 1.3e-56 224.2 186 59.1
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.7e-56 223.8 142 82.4
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 6.0e-54 215.3 143 78.3
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.0e-53 214.5 145 73.8
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.6e-52 208.8 193 60.6
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.1e-50 204.5 193 59.1
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 2.0e-49 200.3 142 70.4
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.9e-48 195.7 193 56.0
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.1e-45 185.7 180 52.2
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.1e-45 185.7 180 52.2
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.5e-44 184.1 143 69.9
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 3.3e-44 183.0 175 56.6
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 4.0e-42 176.0 176 48.9
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.1e-38 163.7 194 43.3
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 3.0e-37 159.8 108 72.2
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.3e-36 156.4 122 62.3
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.6e-35 154.1 185 44.9
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.0e-29 134.8 85 85.9
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 3.3e-28 129.8 97 73.2
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 5.5e-23 112.5 194 35.6
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 5.5e-23 112.5 122 50.8
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 4.3e-20 102.8 187 33.7
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 3.7e-19 99.8 185 33.0
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.8e-11 73.6 50 66.0
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 4.1e-10 69.7 41 78.0
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 7.0e-10 68.9 41 75.6
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.6e-09 67.8 50 62.0
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 3.8e-08 63.2 95 42.1
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.5e-07 61.2 41 63.4
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 4.2e-07 59.7 40 62.5


User provided reference genes

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