Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 0.0e+00 1280.0 648 100.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 5.4e-175 618.6 632 50.8
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 3.7e-168 595.9 634 51.4
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 6.0e-166 588.6 621 51.9
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 5.0e-165 585.5 641 50.4
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 4.3e-164 582.4 654 49.8
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 4.0e-162 575.9 644 49.7
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 5.2e-162 575.5 643 49.5
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 2.0e-161 573.5 637 49.3
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 4.4e-161 572.4 646 49.1
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.3e-160 570.9 634 50.3
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 3.7e-160 569.3 636 50.2
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 8.3e-160 568.2 636 50.3
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 4.1e-159 565.8 632 48.6
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.2e-158 564.3 642 48.6
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.6e-158 563.9 612 51.1
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 6.0e-158 562.0 635 49.1
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 7.8e-158 561.6 652 48.0
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.9e-156 557.0 509 55.0
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 3.3e-156 556.2 642 48.1
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 3.3e-156 556.2 622 49.0
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 2.1e-155 553.5 647 47.6
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 6.2e-155 552.0 636 46.4
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.7e-152 543.9 635 46.5
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.2e-152 543.5 638 47.6
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 2.2e-152 543.5 647 47.4
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 3.8e-152 542.7 635 46.6
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 3.2e-151 539.7 639 47.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.1e-151 538.5 640 46.2
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 7.1e-151 538.5 637 45.4
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 9.2e-151 538.1 645 46.5
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.1e-148 531.2 640 48.1
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.2e-147 527.7 644 47.5
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.8e-147 526.6 633 47.7
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 8.1e-147 525.0 612 45.8
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.8e-146 523.9 633 47.9
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 4.4e-145 519.2 633 48.5
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.2e-144 516.9 637 45.1
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.4e-144 515.4 637 44.9
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.1e-143 514.6 641 44.8
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 2.4e-143 513.5 639 45.9
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.2e-143 513.1 641 44.6
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 7.8e-142 508.4 641 44.0
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.0e-141 508.1 679 44.0
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 8.7e-141 505.0 640 45.2
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 9.0e-138 495.0 643 44.3
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 9.0e-138 495.0 611 45.2
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 9.0e-138 495.0 615 45.0
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.9e-136 490.0 640 44.8
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 3.8e-136 489.6 650 45.1
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.1e-135 488.0 633 44.5
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 1.6e-134 484.2 640 45.6
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 2.1e-134 483.8 635 43.0
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 6.0e-134 482.3 673 42.8
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-133 481.1 637 43.3
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.5e-132 477.6 641 43.4
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 5.6e-132 475.7 641 43.2
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 6.2e-131 472.2 619 45.2
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 4.9e-128 462.6 636 43.1
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 6.4e-128 462.2 639 44.0
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 5.5e-127 459.1 633 42.8
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.2e-126 458.0 613 45.0
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 2.1e-126 457.2 648 40.0
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 3.9e-125 453.0 696 41.2
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.5e-124 451.1 646 39.9
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.9e-124 450.7 509 47.5
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 4.8e-123 446.0 636 42.5
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 4.0e-122 443.0 630 41.7
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 9.0e-122 441.8 624 41.0
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 7.6e-121 438.7 552 44.9
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.3e-120 438.0 630 40.6
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 2.9e-120 436.8 648 43.2
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.1e-119 434.9 653 39.4
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.5e-119 432.6 631 39.1
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 7.9e-118 428.7 637 39.6
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 3.0e-117 426.8 591 41.8
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 5.1e-117 426.0 657 38.7
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.3e-115 421.4 639 39.7
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 1.6e-115 421.0 634 39.4
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 9.0e-114 415.2 636 39.2
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 3.4e-113 413.3 641 38.4
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.7e-112 411.0 633 38.5
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 2.9e-112 410.2 641 39.3
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.2e-111 406.4 634 39.1
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.2e-111 405.6 634 39.0
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 2.7e-110 403.7 640 38.4
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 4.6e-110 402.9 674 37.8
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 3.9e-109 399.8 640 38.1
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 3.3e-108 396.7 640 38.3
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 4.3e-108 396.4 640 38.3
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 7.4e-108 395.6 636 36.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 9.7e-108 395.2 679 36.5
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.7e-107 394.4 459 46.0
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.7e-107 394.4 655 38.8
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 2.8e-107 393.7 640 38.1
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.1e-106 391.7 542 41.1
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-106 391.3 614 40.2
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.4e-106 391.3 634 38.3
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 2.6e-105 387.1 637 39.1
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 2.2e-104 384.0 404 51.5
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.1e-103 381.7 642 37.7
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.6e-102 377.9 591 38.4
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.0e-101 375.2 637 37.8
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 6.7e-101 372.5 644 37.4
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 1.1e-100 371.7 460 43.0
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.6e-89 334.0 611 36.3
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.4e-85 321.6 636 35.5
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.8e-85 318.9 321 55.1
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.6e-84 317.4 638 34.0
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 2.0e-81 307.8 464 38.8
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 9.1e-74 282.3 449 37.9
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 7.7e-73 279.3 444 35.6
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.1e-71 275.4 632 32.1
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 7.0e-66 256.1 485 35.1
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.2e-65 255.4 648 31.8
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 4.5e-65 253.4 632 31.0
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 3.6e-62 243.8 519 32.6
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 2.3e-61 241.1 187 62.0
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 8.9e-61 239.2 353 40.5
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 2.0e-57 228.0 658 29.8
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.8e-54 217.6 206 56.3
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 6.0e-49 199.9 333 39.3
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.3e-47 194.1 202 47.0
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.6e-46 190.7 223 50.7
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.1e-45 189.1 233 47.2
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 4.9e-43 180.3 187 53.5
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.9e-39 168.3 545 27.2
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 2.8e-38 164.5 217 44.7
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.1e-37 162.5 224 46.9
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 3.0e-32 144.4 676 24.6
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 3.0e-32 144.4 676 24.6
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 1.2e-28 132.5 462 25.8
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 9.6e-23 112.8 260 30.4
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 6.0e-17 93.6 181 34.8
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.3e-16 92.4 114 42.1
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 2.3e-16 91.7 113 38.1
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 8.1e-14 83.2 171 33.3
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.5e-12 79.0 168 30.4


User provided reference genes

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