Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 6.7e-204 713.8 354 100.0
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.9e-122 442.6 356 62.6
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.4e-121 439.5 363 62.3
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.4e-121 438.3 355 63.7
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.3e-119 433.7 356 62.4
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.5e-118 430.3 358 61.2
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 3.3e-118 429.1 355 62.3
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 9.6e-118 427.6 352 62.5
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.6e-117 426.8 358 60.9
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 2.8e-117 426.0 355 60.8
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.4e-113 413.7 353 58.9
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.0e-111 407.5 356 61.2
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.1e-111 405.2 371 56.3
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.4e-108 397.1 371 55.8
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.3e-108 395.2 354 56.8
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.3e-108 395.2 354 56.8
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 5.3e-108 395.2 352 61.1
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 4.5e-107 392.1 356 59.6
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 8.4e-106 387.9 361 57.6
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.5e-105 386.3 282 64.5
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.2e-104 384.0 354 57.9
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 3.5e-104 382.5 370 54.6
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 2.3e-103 379.8 356 54.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 1.9e-102 376.7 353 55.2
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 5.7e-102 375.2 358 54.2
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.2e-101 373.2 361 55.1
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 8.2e-101 371.3 361 54.6
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 1.4e-100 370.5 353 56.7
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 4.1e-100 369.0 356 54.8
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.6e-99 366.3 361 54.0
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 3.4e-99 365.9 352 55.7
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 5.9e-99 365.2 361 54.0
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 5.9e-99 365.2 277 65.0
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 5.0e-98 362.1 373 51.2
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 8.5e-98 361.3 357 52.9
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.5e-97 359.8 366 53.0
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 9.4e-97 357.8 363 54.8
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.2e-96 357.5 331 57.1
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.6e-96 357.1 360 52.8
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 2.1e-96 356.7 358 52.8
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 2.7e-96 356.3 358 53.4
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 6.1e-96 355.1 356 53.7
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 7.9e-96 354.8 360 51.7
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 7.9e-96 354.8 357 52.7
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 7.9e-96 354.8 359 52.4
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.0e-95 354.4 357 53.5
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 1.4e-95 354.0 362 53.6
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 1.4e-95 354.0 362 52.8
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 2.3e-95 353.2 357 51.8
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 3.0e-95 352.8 357 52.1
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 8.8e-95 351.3 356 53.4
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 8.8e-95 351.3 358 51.4
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.5e-94 349.7 370 50.5
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 4.3e-94 349.0 362 51.4
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 4.3e-94 349.0 372 51.6
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 4.3e-94 349.0 372 51.6
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.3e-93 347.4 362 52.8
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 3.7e-93 345.9 362 51.7
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 8.2e-93 344.7 370 51.4
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.4e-92 344.0 363 53.2
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 3.1e-92 342.8 361 52.9
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.1e-92 342.8 362 51.4
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 3.1e-92 342.8 363 50.4
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 4.1e-92 342.4 363 51.8
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.5e-91 340.5 362 50.0
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 5.9e-91 338.6 361 50.7
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.3e-90 337.4 359 52.9
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 1.7e-90 337.0 266 61.3
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 3.8e-90 335.9 357 50.7
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.0e-90 335.5 390 48.2
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.0e-90 335.5 390 48.2
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.0e-90 335.5 321 58.9
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 6.5e-90 335.1 362 49.2
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.5e-90 335.1 392 48.0
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.9e-89 333.6 359 49.9
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 4.2e-89 332.4 374 49.5
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 9.4e-89 331.3 360 49.7
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.0e-87 327.8 370 49.5
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.4e-87 327.4 354 50.8
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 3.0e-87 326.2 355 48.2
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 8.8e-87 324.7 357 49.0
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 4.4e-86 322.4 267 57.3
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 2.8e-85 319.7 360 47.8
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 6.3e-85 318.5 353 49.9
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 8.2e-85 318.2 350 48.9
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.8e-84 317.0 367 46.9
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 2.4e-84 316.6 267 57.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.1e-84 316.2 311 51.1
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 3.1e-84 316.2 361 51.2
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 4.1e-84 315.8 350 49.1
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 5.3e-84 315.5 344 49.4
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 1.5e-83 313.9 351 48.7
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.7e-82 310.5 362 48.1
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.5e-82 308.1 353 50.4
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.5e-81 306.6 359 45.7
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 3.2e-81 306.2 272 55.1
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.7e-80 303.1 273 57.5
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 3.6e-80 302.8 356 46.9
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 6.1e-80 302.0 357 46.8
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 8.0e-80 301.6 357 46.8
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.0e-79 301.2 354 47.2
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.4e-79 300.8 359 46.2
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 3.0e-79 299.7 357 48.2
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 3.0e-79 299.7 350 48.6
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 3.9e-79 299.3 354 47.2
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 6.7e-79 298.5 355 47.6
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.0e-78 297.0 402 43.3
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 2.6e-78 296.6 323 49.5
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 2.6e-78 296.6 354 48.0
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 6.3e-77 292.0 355 45.9
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.1e-76 291.2 358 46.1
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.8e-76 290.4 291 49.8
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 5.3e-76 288.9 354 47.2
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 2.0e-75 287.0 358 46.4
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 2.0e-75 287.0 351 43.0
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 2.6e-75 286.6 354 46.9
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 4.5e-75 285.8 355 45.6
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 5.9e-75 285.4 352 46.0
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 5.9e-75 285.4 355 45.1
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 7.7e-75 285.0 320 49.1
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.7e-74 283.9 362 46.1
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.7e-74 283.9 350 45.7
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.7e-74 283.9 351 46.4
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 4.2e-73 279.3 351 44.2
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 4.2e-73 279.3 357 44.8
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 4.2e-73 279.3 283 52.7
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 3.6e-72 276.2 257 54.1
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 6.1e-72 275.4 352 45.7
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 2.3e-71 273.5 264 56.1
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.2e-69 266.9 313 46.0
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 2.8e-69 266.5 240 55.4
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.7e-69 266.2 324 47.2
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.8e-68 263.8 318 44.0
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.8e-68 263.8 318 44.0
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 5.3e-68 262.3 352 44.0
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 7.0e-68 261.9 309 44.3
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.2e-67 261.2 318 43.7
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 7.7e-67 258.5 369 40.9
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 3.2e-65 253.1 322 46.0
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 2.2e-61 240.4 312 43.6
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.8e-61 240.0 358 41.3
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 5.4e-60 235.7 430 34.9
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.1e-57 228.0 249 50.6
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 6.1e-56 222.2 212 50.5
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 8.3e-53 211.8 291 41.2
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.1e-52 209.9 321 40.2
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 2.7e-51 206.8 261 43.3
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 3.8e-50 203.0 206 52.4
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 8.6e-50 201.8 318 39.0
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 4.0e-47 193.0 315 39.4
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 5.0e-42 176.0 250 40.0
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.3e-41 172.2 181 50.8
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 3.6e-40 169.9 200 46.0
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 3.6e-40 169.9 130 57.7
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 4.4e-38 162.9 449 27.4
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 7.5e-38 162.2 200 46.5
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.9e-37 160.2 149 58.4
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 6.8e-31 139.0 159 47.2
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.3e-29 134.8 332 29.2
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 1.1e-28 131.7 164 47.0
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 3.2e-28 130.2 77 75.3
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 5.6e-25 119.4 122 47.5
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.6e-24 117.9 159 42.1
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 7.6e-22 109.0 206 35.4
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.3e-21 108.2 134 47.0
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 6.6e-18 95.9 80 56.2
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 8.7e-18 95.5 105 39.0
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.1e-17 95.1 80 55.0
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.5e-17 94.7 101 49.5
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.3e-17 93.2 124 47.6
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 7.3e-17 92.4 288 26.0
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 6.9e-15 85.9 145 31.0
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 2.0e-14 84.3 153 39.9
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 4.4e-14 83.2 107 40.2
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 5.8e-14 82.8 85 50.6
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 6.4e-13 79.3 80 47.5
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 9.3e-12 75.5 157 31.8
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 5.1e-10 69.7 80 41.2
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 5.6e-09 66.2 56 51.8
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 1.8e-07 61.2 43 60.5
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 5.3e-07 59.7 43 53.5
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 6.9e-07 59.3 52 53.8
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 6.9e-07 59.3 47 59.6


User provided reference genes

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