Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06500 Coffea canephora HOM05D007097 ORTHO05D008131 1.8e-159 565.8 278 100.0
Nitab4.5_0000020g0090 Nicotiana tabacum HOM05D007097 ORTHO05D008131 1.7e-64 250.4 273 53.1
Migut.J00707 Erythranthe guttata HOM05D007097 ORTHO05D008131 3.1e-63 246.1 293 50.9
PGSC0003DMG400028148 Solanum tuberosum HOM05D007097 ORTHO05D008131 2.6e-62 243.0 279 48.4
Sopen10g032440 Solanum pennellii HOM05D007097 ORTHO05D008131 5.9e-62 241.9 276 47.8
Solyc10g081930.1 Solanum lycopersicum HOM05D007097 ORTHO05D008131 1.3e-61 240.7 276 47.8
Dinv31755 Davidia involucrata HOM05D007097 ORTHO05D008131 2.9e-61 239.6 259 49.4
SGA_v2.0_scaffold13G06627 Striga asiatica HOM05D007097 ORTHO05D008131 1.9e-60 236.9 297 48.8
CAN.G1245.7 Capsicum annuum HOM05D007097 ORTHO05D008131 5.5e-60 235.3 284 47.2
Nitab4.5_0005325g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 9.4e-60 234.6 273 51.6
PGSC0003DMG400016423 Solanum tuberosum HOM05D007097 ORTHO05D008131 3.3e-57 226.1 274 48.9
Solyc01g007190.3 Solanum lycopersicum HOM05D007097 ORTHO05D008131 2.0e-54 216.9 273 46.5
Sopen01g003170 Solanum pennellii HOM05D007097 ORTHO05D008131 2.6e-54 216.5 274 47.4
SGA_v2.0_scaffold31G12846 Striga asiatica HOM05D007097 ORTHO05D008131 7.7e-54 214.9 290 46.2
Actinidia37742 Actinidia chinensis HOM05D007097 ORTHO05D008131 1.7e-53 213.8 278 45.3
Nitab4.5_0001287g0020 Nicotiana tabacum HOM05D007097 ORTHO05D008131 4.2e-44 182.6 271 41.0
Nitab4.5_0010913g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 1.6e-43 180.6 266 42.5
SalBow5G4860 Salvia bowleyana HOM05D007097 ORTHO05D008131 1.8e-42 177.2 273 41.0
Peaxi162Scf00211g00105 Petunia axillaris HOM05D007097 ORTHO05D008131 5.2e-42 175.6 280 40.0
Nn6g34702 Nelumbo nucifera HOM05D007097 ORTHO05D008131 6.5e-37 158.7 295 37.6
unitig_578.g16474 Utricularia gibba HOM05D007097 ORTHO05D008131 6.5e-37 158.7 285 38.6
DCAR_020707 Daucus carota HOM05D007097 ORTHO05D008131 1.5e-36 157.5 275 37.1
SGA_v2.0_scaffold35G14013 Striga asiatica HOM05D007097 ORTHO05D008131 1.9e-36 157.1 278 37.8
CiPaw.09G020600 Carya illinoinensis HOM05D007097 ORTHO05D008131 2.5e-36 156.8 280 39.6
COL.COLO4_29582 Corchorus olitorius HOM05D007097 ORTHO05D008131 1.0e-34 151.4 275 35.6
Lsat_1_v5_gn_1_57020 Lactuca sativa HOM05D007097 ORTHO05D008131 2.3e-34 150.2 267 37.5
Haze_20191 Corylus avellana HOM05D007097 ORTHO05D008131 4.0e-34 149.4 277 37.5
Cpa.g.sc104.37 Carica papaya HOM05D007097 ORTHO05D008131 2.0e-33 147.1 274 38.3
Actinidia37743 Actinidia chinensis HOM05D007097 ORTHO05D008131 7.5e-33 145.2 142 51.4
Manes.09G044900 Manihot esculenta HOM05D007097 ORTHO05D008131 9.8e-33 144.8 269 34.9
FvH4_6g20260 Fragaria vesca HOM05D007097 ORTHO05D008131 1.7e-32 144.1 279 34.1
TWI74G0793 Tripterygium wilfordii HOM05D007097 ORTHO05D008131 1.7e-32 144.1 270 37.0
Sabra06G0157000 Salix brachista HOM05D007097 ORTHO05D008131 2.8e-32 143.3 283 35.3
unitig_22.g5144 Utricularia gibba HOM05D007097 ORTHO05D008131 2.8e-32 143.3 282 37.2
FAN05G2168 Fragaria x ananassa HOM05D007097 ORTHO05D008131 3.7e-32 142.9 275 34.9
Rhsim03G0065800 Rhododendron simsii HOM05D007097 ORTHO05D008131 3.7e-32 142.9 277 35.7
FAN09G3875 Fragaria x ananassa HOM05D007097 ORTHO05D008131 8.3e-32 141.7 277 34.7
Gorai.006G149800 Gossypium raimondii HOM05D007097 ORTHO05D008131 1.1e-31 141.4 274 33.6
FAN05G0285 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.4e-31 141.0 280 34.6
Cfa020025 Carpinus fangiana HOM05D007097 ORTHO05D008131 3.1e-31 139.8 279 36.9
FAN14G0555 Fragaria x ananassa HOM05D007097 ORTHO05D008131 3.1e-31 139.8 274 33.9
FAN02G1136 Fragaria x ananassa HOM05D007097 ORTHO05D008131 4.1e-31 139.4 277 34.3
Nn2g14294 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.2e-30 137.9 283 36.7
HanXRQChr01g0025661 Helianthus annuus HOM05D007097 ORTHO05D008131 4.5e-30 136.0 267 35.2
Lsat_1_v5_gn_2_55400 Lactuca sativa HOM05D007097 ORTHO05D008131 4.5e-30 136.0 267 35.2
MD12G1039700 Malus domestica HOM05D007097 ORTHO05D008131 1.0e-29 134.8 287 34.1
TAR633G2246 Trochodendron aralioides HOM05D007097 ORTHO05D008131 2.9e-29 133.3 289 35.6
Actinidia06180 Actinidia chinensis HOM05D000517 ORTHO05D008131 1.1e-28 131.3 238 39.1
Gohir.A09G134600 Gossypium hirsutum HOM05D007097 ORTHO05D008131 1.1e-28 131.3 273 32.6
Thecc.05G103600 Theobroma cacao HOM05D007097 ORTHO05D008131 1.9e-28 130.6 272 32.7
Gohir.D09G131100 Gossypium hirsutum HOM05D007097 ORTHO05D008131 3.3e-28 129.8 276 32.2
Prupe.7G095200 Prunus persica HOM05D007097 ORTHO05D008131 3.3e-28 129.8 281 33.5
Sc02g0000610 Simmondsia chinensis HOM05D007097 ORTHO05D008131 3.3e-28 129.8 188 41.0
ClCG10G018390 Citrullus lanatus HOM05D007097 ORTHO05D008131 4.2e-28 129.4 279 33.7
Glyma.10G081100 Glycine max HOM05D007097 ORTHO05D008131 1.6e-27 127.5 270 33.7
DCAR_009176 Daucus carota HOM05D007097 ORTHO05D008131 4.7e-27 125.9 262 34.7
RcHm_v2.0_Chr3g0475851 Rosa chinensis HOM05D007097 ORTHO05D008131 8.0e-27 125.2 283 31.8
ECA248G2186 Erigeron canadensis HOM05D007097 ORTHO05D008131 2.3e-26 123.6 271 33.6
TAR623G1722 Trochodendron aralioides HOM05D007097 ORTHO05D008131 2.3e-26 123.6 281 32.4
Sed0014531 Sechium edule HOM05D007097 ORTHO05D008131 1.2e-25 121.3 281 31.7
Manes.08G033000 Manihot esculenta HOM05D007097 ORTHO05D008131 2.0e-25 120.6 267 31.1
Lalb_Chr01g0017871 Lupinus albus HOM05D007097 ORTHO05D008131 5.7e-25 119.0 281 34.2
MD14G1038300 Malus domestica HOM05D007097 ORTHO05D008131 5.7e-25 119.0 285 31.9
Nn1g01483 Nelumbo nucifera HOM05D007097 ORTHO05D008131 7.5e-25 118.6 160 45.6
HPP92_025143 Vanilla planifolia HOM05D007097 ORTHO05D008131 7.5e-25 118.6 276 30.4
HanXRQChr13g0398381 Helianthus annuus HOM05D007097 ORTHO05D008131 9.8e-25 118.2 274 32.8
HPP92_026079 Vanilla planifolia HOM05D007097 ORTHO05D008131 1.3e-24 117.9 276 30.4
Lalb_Chr20g0111401 Lupinus albus HOM05D007097 ORTHO05D008131 2.8e-24 116.7 284 31.7
HanXRQChr09g0239941 Helianthus annuus HOM05D007097 ORTHO05D008131 3.7e-24 116.3 273 31.1
Atru.chr8.1373 Acer truncatum HOM05D007097 ORTHO05D008131 7.0e-23 112.1 264 33.3
VMungo0720G1866 Vigna mungo HOM05D007097 ORTHO05D008131 5.9e-22 109.0 278 30.9
Peaxi162Scf00388g01015 Petunia axillaris HOM05D007097 ORTHO05D008131 1.3e-21 107.8 81 66.7
MELO3C009534.2 Cucumis melo HOM05D007097 ORTHO05D008131 1.5e-20 104.4 282 29.4
CsaV3_3G037910 Cucumis sativus L. HOM05D007097 ORTHO05D008131 4.3e-20 102.8 272 28.3
Sed0025399 Sechium edule HOM05D007097 ORTHO05D008131 7.3e-20 102.1 280 29.3
Lalb_Chr25g0288011 Lupinus albus HOM05D007097 ORTHO05D008131 9.5e-20 101.7 279 31.5
QL07p036825 Quercus lobata HOM05D007097 ORTHO05D008131 1.2e-19 101.3 300 30.3
HanXRQChr16g0532971 Helianthus annuus HOM05D007097 ORTHO05D008131 1.6e-19 100.9 151 35.1
Ciclev10012818m.g Citrus clementina HOM05D007097 ORTHO05D008131 2.1e-19 100.5 92 54.3
Glyma.03G201700 Glycine max HOM05D007097 ORTHO05D008131 2.8e-19 100.1 276 28.6
Lsat_1_v5_gn_1_58041 Lactuca sativa HOM05D007097 ORTHO05D008131 1.4e-18 97.8 266 29.3
Nn2g13712 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.8e-18 97.4 167 40.1
AUR62006282 Chenopodium quinoa HOM05D007097 ORTHO05D008131 2.3e-18 97.1 279 29.7
Oeu006273.1 Olea europaea HOM05D007097 ORTHO05D008131 2.3e-18 97.1 155 40.0
Lj5g0024854 Lotus japonicus HOM05D007097 ORTHO05D008131 6.8e-18 95.5 280 29.6
Ca_11701_v3 Cicer arietinum L. HOM05D007097 ORTHO05D008131 2.6e-17 93.6 272 26.1
Psat6g114400 Pisum sativum HOM05D007097 ORTHO05D008131 4.4e-17 92.8 272 25.4
Ah.08g210070 Amaranthus hybridus HOM05D007097 ORTHO05D008131 2.2e-16 90.5 282 29.4
Phvul.007G268300 Phaseolus vulgaris HOM05D007097 ORTHO05D008131 6.4e-16 89.0 275 26.5
GSVIVG01033951001 Vitis vinifera HOM05D009231 ORTHO05D010800 1.1e-15 88.2 232 31.0
TPR.G2776 Trifolium pratense HOM05D007097 ORTHO05D008131 1.9e-15 87.4 283 26.9
Eucgr.K02617 Eucalyptus grandis HOM05D007097 ORTHO05D008131 9.2e-15 85.1 281 25.3
Actinidia03892 Actinidia chinensis HOM05D007097 ORTHO05D008131 4.6e-14 82.8 104 41.3
ATR0772G224 Amborella trichopoda HOM05D007097 ORTHO05D008131 1.0e-13 81.6 273 30.0
SMO119G0030 Selaginella moellendorffii HOM05D017347 ORTHO05D008131 3.9e-13 79.7 106 39.6
Glyma.02G197300 Glycine max HOM05D007097 ORTHO05D008131 6.6e-13 79.0 275 25.5
AUR62026332 Chenopodium quinoa HOM05D007097 ORTHO05D008131 8.6e-13 78.6 96 41.7
Pp3c10_10040 Physcomitrium patens HOM05D017347 ORTHO05D008131 1.9e-12 77.4 105 40.0
Medtr1g057600 Medicago truncatula HOM05D007097 ORTHO05D008131 3.3e-12 76.6 270 25.9
Mapoly0048s0108 Marchantia polymorpha HOM05D017347 ORTHO05D008131 7.3e-12 75.5 98 42.9
SEGI_34425 Sequoiadendron giganteum HOM05D017347 ORTHO05D008131 7.3e-12 75.5 98 40.8
ECA233G1347 Erigeron canadensis HOM05D007097 ORTHO05D008131 1.2e-11 74.7 96 40.6
CBR_g27764 Chara braunii HOM05D017347 ORTHO05D008131 1.8e-10 70.9 98 39.8
SEGI_18590 Sequoiadendron giganteum HOM05D017347 ORTHO05D008131 4.0e-10 69.7 94 33.0
Nn8g40734 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.5e-09 67.8 57 50.9
Sc20g0006720 Simmondsia chinensis HOM05D007097 ORTHO05D008131 5.8e-09 65.9 94 38.3
Ah.08g210060 Amaranthus hybridus HOM05D007097 ORTHO05D008131 8.3e-08 62.0 98 33.7
Os04g0685700 Oryza sativa ssp. japonica HOM05D007097 ORTHO05D008131 7.1e-07 58.9 274 24.5


User provided reference genes

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