Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06470 Coffea canephora HOM05D022101 ORTHO05D022209 1.2e-152 543.1 261 100.0
Oeu052622.2 Olea europaea HOM05D022101 ORTHO05D022209 1.6e-32 144.1 263 33.1
Rhsim03G0065900 Rhododendron simsii HOM05D008136 ORTHO05D002052 5.2e-28 129.0 262 33.6
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 6.8e-28 128.6 259 33.6
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 5.4e-25 119.0 260 31.9
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 9.2e-25 118.2 245 31.8
Dinv31752 Davidia involucrata HOM05D002687 ORTHO05D022209 2.7e-24 116.7 261 33.3
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 4.6e-24 115.9 234 32.1
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 6.0e-24 115.5 259 30.1
DCAR_003063 Daucus carota HOM05D008136 ORTHO05D014468 2.3e-23 113.6 246 29.3
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.9e-22 110.5 260 28.1
CANSAT64G0025 Cannabis sativa HOM05D008136 ORTHO05D002052 3.3e-22 109.8 178 31.5
Actinidia32046 Actinidia chinensis HOM05D000182 ORTHO05D000112 7.3e-22 108.6 207 31.9
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 1.6e-21 107.5 261 31.4
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 2.1e-21 107.1 209 29.2
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 2.8e-21 106.7 231 32.5
PGSC0003DMG400016432 Solanum tuberosum HOM05D022101 ORTHO05D022209 3.6e-21 106.3 236 30.1
Sopen01g003200 Solanum pennellii HOM05D022101 ORTHO05D022209 4.7e-21 105.9 215 29.3
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 6.2e-21 105.5 270 30.4
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 1.8e-20 104.0 258 31.4
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 1.8e-20 104.0 246 32.5
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 2.3e-20 103.6 272 30.1
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 4.0e-20 102.8 264 29.2
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 4.0e-20 102.8 271 29.2
Nn2g14283 Nelumbo nucifera HOM05D002687 ORTHO05D002052 5.2e-20 102.4 241 27.4
SGA_v2.0_scaffold31G12844 Striga asiatica HOM05D012176 ORTHO05D014468 5.2e-20 102.4 232 27.6
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 6.8e-20 102.1 255 31.0
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 8.9e-20 101.7 251 31.1
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 1.2e-19 101.3 234 29.1
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 1.5e-19 100.9 258 31.4
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 2.6e-19 100.1 262 30.5
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 3.4e-19 99.8 238 29.0
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 3.4e-19 99.8 255 32.5
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 5.8e-19 99.0 256 27.7
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 9.8e-19 98.2 241 27.8
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 1.7e-18 97.4 269 31.6
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 2.2e-18 97.1 209 29.2
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.9e-18 96.7 254 26.0
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 3.7e-18 96.3 264 29.5
Oeu055534.1 Olea europaea HOM05D012176 ORTHO05D014468 3.7e-18 96.3 174 32.8
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 4.9e-18 95.9 274 27.7
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 8.3e-18 95.1 231 25.1
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 1.4e-17 94.4 246 27.6
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 1.4e-17 94.4 254 28.3
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 2.4e-17 93.6 163 32.5
THA.LOC104823630 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 7.1e-17 92.0 243 29.2
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.2e-16 91.3 256 30.1
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 1.6e-16 90.9 259 29.0
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 2.1e-16 90.5 256 24.2
Oeu050407.1 Olea europaea HOM05D012176 ORTHO05D014468 2.1e-16 90.5 247 29.1
Oeu009048.1 Olea europaea HOM05D002687 ORTHO05D002052 3.5e-16 89.7 261 28.4
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 4.6e-16 89.4 255 25.9
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 1.0e-15 88.2 253 30.4
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 1.0e-15 88.2 168 26.8
PGSC0003DMG400028150 Solanum tuberosum HOM05D024778 ORTHO05D025937 1.0e-15 88.2 272 29.0
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 1.3e-15 87.8 258 26.4
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.3e-15 87.8 261 25.7
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 1.3e-15 87.8 248 28.6
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.7e-15 87.4 228 31.1
Nitab4.5_0002958g0020 Nicotiana tabacum HOM05D012176 ORTHO05D014468 2.3e-15 87.0 212 28.3
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 3.0e-15 86.7 249 26.5
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.0e-15 86.7 253 27.3
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.0e-15 86.7 253 27.3
THA.LOC104825213 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 5.1e-15 85.9 254 29.5
Sed0009075 Sechium edule HOM05D002687 ORTHO05D002052 6.6e-15 85.5 233 29.2
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 6.6e-15 85.5 263 25.5
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 1.1e-14 84.7 233 28.3
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 2.5e-14 83.6 258 25.2
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 4.3e-14 82.8 236 27.1
Nitab4.5_0000020g0110 Nicotiana tabacum HOM05D012176 ORTHO05D014468 4.3e-14 82.8 223 27.4
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 5.6e-14 82.4 260 25.8
arahy.Tifrunner.gnm1.ann1.AI123M Arachis hypogaea HOM05D002687 ORTHO05D002052 7.3e-14 82.0 262 26.7
Aqoxy1G00678 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 9.5e-14 81.6 259 24.3
MSTRG.5900 Avicennia marina HOM05D012176 ORTHO05D014468 1.2e-13 81.3 251 25.9
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.2e-13 81.3 249 24.1
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.6e-13 80.9 187 32.1
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 2.1e-13 80.5 258 24.4
Potri.016G071200 Populus trichocarpa HOM05D038355 ORTHO05D002052 2.1e-13 80.5 241 29.5
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.8e-13 80.1 254 27.2
PGSC0003DMG400016421 Solanum tuberosum HOM05D012176 ORTHO05D014468 3.6e-13 79.7 215 28.4
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 4.7e-13 79.3 234 27.4
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 2.3e-12 77.0 243 23.5
Migut.J00709 Erythranthe guttata HOM05D012176 ORTHO05D002052 3.1e-12 76.6 232 23.7
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 5.2e-12 75.9 227 22.5
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 6.8e-12 75.5 189 27.5
Prupe.7G096500 Prunus persica HOM05D010052 ORTHO05D010666 2.0e-11 73.9 150 28.0
Gohir.D09G131400 Gossypium hirsutum HOM05D008136 ORTHO05D002052 2.6e-11 73.6 225 27.1
MD12G1087900 Malus domestica HOM05D010052 ORTHO05D010666 2.6e-11 73.6 196 24.0
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 4.4e-11 72.8 256 25.0
Gorai.006G150000 Gossypium raimondii HOM05D008136 ORTHO05D002052 4.4e-11 72.8 233 27.0
CiPaw.10G016800 Carya illinoinensis HOM05D008136 ORTHO05D002052 5.8e-11 72.4 205 29.3
Dinv35090 Davidia involucrata HOM05D000957 ORTHO05D000754 5.8e-11 72.4 186 28.0
MSTRG.19312 Avicennia marina HOM05D012176 ORTHO05D014468 7.6e-11 72.0 203 23.6
PGR004G1626 Punica granatum HOM05D008136 ORTHO05D002052 7.6e-11 72.0 237 27.4
TAR636G1837 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.9e-10 70.1 181 25.4
Migut.B00865 Erythranthe guttata HOM05D012176 ORTHO05D014468 3.8e-10 69.7 168 29.8
FvH4_6g20177 Fragaria vesca HOM05D002687 ORTHO05D002052 3.8e-10 69.7 173 27.2
MD07G1151300 Malus domestica HOM05D010052 ORTHO05D010666 1.1e-09 68.2 184 23.9
FvH4_5g22901 Fragaria vesca HOM05D010052 ORTHO05D010666 1.4e-09 67.8 200 26.5
Prupe.7G048100 Prunus persica HOM05D010052 ORTHO05D010666 1.4e-09 67.8 198 26.8
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 2.4e-09 67.0 193 24.9
FAN14G3199 Fragaria x ananassa HOM05D029328 ORTHO05D002052 3.2e-09 66.6 159 27.7
CAN.G574.25 Capsicum annuum HOM05D022101 ORTHO05D022209 4.1e-09 66.2 141 26.2
FAN18G3409 Fragaria x ananassa HOM05D010052 ORTHO05D010666 4.1e-09 66.2 200 26.0
MD14G1037700 Malus domestica HOM05D018155 ORTHO05D020655 5.4e-09 65.9 266 24.1
PGR102G2129 Punica granatum HOM05D002687 ORTHO05D002052 7.1e-09 65.5 198 23.7
Manes.09G046600 Manihot esculenta HOM05D002687 ORTHO05D002052 1.6e-08 64.3 244 26.6
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 1.6e-08 64.3 252 22.6
arahy.Tifrunner.gnm1.ann1.N0JQU4 Arachis hypogaea HOM05D002687 ORTHO05D002052 6.0e-08 62.4 182 24.2
Gohir.A09G134801 Gossypium hirsutum HOM05D008136 ORTHO05D002052 6.0e-08 62.4 134 28.4
RcHm_v2.0_Chr7g0211331 Rosa chinensis HOM05D010052 ORTHO05D010666 6.0e-08 62.4 208 25.5
QL01p011200 Quercus lobata HOM05D002687 ORTHO05D002052 7.8e-08 62.0 180 23.9
Phvul.001G195100 Phaseolus vulgaris HOM05D008136 ORTHO05D002052 1.7e-07 60.8 244 27.5
Medtr4g051652 Medicago truncatula HOM05D002687 ORTHO05D002052 3.0e-07 60.1 196 21.9
arahy.Tifrunner.gnm1.ann1.UY1REM Arachis hypogaea HOM05D002687 ORTHO05D002052 5.1e-07 59.3 176 23.9
TPR.G4667 Trifolium pratense HOM05D002687 ORTHO05D002052 1.5e-06 57.8 198 23.7
FvH4_3g40821 Fragaria vesca HOM05D010052 ORTHO05D010666 2.5e-06 57.0 194 25.3
FAN11G3829 Fragaria x ananassa HOM05D010052 ORTHO05D010666 2.5e-06 57.0 194 25.3
Lj5g0011569 Lotus japonicus HOM05D008136 ORTHO05D002052 2.5e-06 57.0 216 23.6
Glyma.10G080800 Glycine max HOM05D008136 ORTHO05D002052 4.3e-06 56.2 245 24.5
CAN.G574.24 Capsicum annuum HOM05D012176 ORTHO05D014468 5.6e-06 55.8 140 27.1
CANSAT64G0978 Cannabis sativa HOM05D000733 ORTHO05D000649 7.3e-06 55.5 167 22.8


User provided reference genes

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