Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 1.0e-179 633.3 311 100.0
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 9.0e-128 460.7 312 67.9
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 8.4e-126 454.1 312 67.3
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 1.1e-125 453.8 310 67.4
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 3.5e-124 448.7 310 66.8
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 1.3e-123 446.8 308 67.2
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 2.8e-121 439.1 297 68.4
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 1.4e-120 436.8 314 66.2
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 5.3e-120 434.9 301 66.4
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 4.6e-116 421.8 294 65.3
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 7.9e-116 421.0 314 62.1
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 5.1e-115 418.3 306 63.4
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 3.3e-114 415.6 301 62.5
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 9.7e-114 414.1 310 61.6
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 1.6e-113 413.3 309 63.1
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 1.6e-113 413.3 308 62.0
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 3.1e-112 409.1 312 59.3
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 3.1e-112 409.1 310 61.3
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 1.2e-111 407.1 312 60.9
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 1.3e-110 403.7 309 62.5
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 3.8e-110 402.1 297 60.9
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 3.8e-110 402.1 304 61.8
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 6.5e-110 401.4 303 60.7
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 1.1e-109 400.6 311 57.9
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 1.9e-109 399.8 311 60.5
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 7.2e-109 397.9 313 59.1
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 9.4e-109 397.5 295 62.0
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 4.6e-108 395.2 299 60.5
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 1.4e-107 393.7 314 58.3
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 2.3e-107 392.9 314 60.5
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 2.3e-107 392.9 306 58.2
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 8.8e-107 391.0 283 66.4
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 1.1e-106 390.6 306 59.2
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 1.5e-106 390.2 300 62.3
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 1.5e-106 390.2 299 60.2
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 2.0e-106 389.8 305 61.0
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 2.0e-106 389.8 300 61.3
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 2.5e-106 389.4 299 59.2
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 2.5e-106 389.4 289 61.2
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 5.7e-106 388.3 301 60.1
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 9.7e-106 387.5 308 57.5
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 1.3e-105 387.1 295 61.4
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.3e-105 387.1 301 59.8
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 2.8e-105 386.0 306 57.5
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 2.8e-105 386.0 298 57.7
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 6.3e-105 384.8 297 59.3
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 1.4e-104 383.6 280 63.2
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 2.4e-104 382.9 319 58.3
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 3.1e-104 382.5 300 59.0
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 4.1e-104 382.1 301 55.8
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 6.9e-104 381.3 299 58.2
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 9.1e-104 380.9 301 58.8
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 1.2e-103 380.6 301 55.1
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 2.0e-103 379.8 314 57.6
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 3.4e-103 379.0 301 58.8
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 5.9e-103 378.3 297 58.6
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 5.9e-103 378.3 301 59.1
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 7.7e-103 377.9 302 56.3
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 1.0e-102 377.5 280 61.1
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 3.2e-101 372.5 280 60.4
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 7.9e-100 367.9 299 57.2
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 4.4e-98 362.1 450 44.2
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 9.7e-98 360.9 278 60.1
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 9.7e-98 360.9 302 54.0
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 2.2e-97 359.8 296 56.1
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 2.8e-97 359.4 293 57.7
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 4.8e-97 358.6 284 58.1
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 2.0e-95 353.2 321 54.2
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 2.0e-95 353.2 295 52.9
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 6.5e-94 348.2 298 55.0
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 1.4e-91 340.5 298 52.7
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.3e-91 339.7 393 45.0
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 5.2e-91 338.6 237 66.2
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 8.8e-91 337.8 298 52.3
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 8.8e-91 337.8 253 60.1
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 1.7e-89 333.6 260 58.1
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 8.2e-89 331.3 267 58.4
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 9.1e-88 327.8 354 49.4
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 1.6e-87 327.0 228 64.9
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 1.7e-86 323.6 293 53.9
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 1.8e-83 313.5 236 59.7
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 8.8e-83 311.2 235 60.4
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.0e-82 310.1 262 56.1
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 1.3e-81 307.4 291 48.8
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 2.7e-79 299.7 314 50.3
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 4.2e-77 292.4 208 64.4
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 9.4e-77 291.2 198 69.2
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 3.4e-74 282.7 231 57.6
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 7.0e-72 275.0 250 50.0
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 8.6e-70 268.1 349 43.3
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 2.8e-68 263.1 281 45.6
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 3.2e-64 249.6 308 41.2
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 9.5e-61 238.0 204 53.9
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 7.0e-56 221.9 195 55.9
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 2.7e-55 219.9 195 55.4
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 5.0e-54 215.7 300 39.3
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 8.6e-54 214.9 313 37.7
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 3.3e-53 213.0 278 42.1
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 9.5e-53 211.5 174 56.3
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 4.7e-52 209.1 157 62.4
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 4.9e-49 199.1 134 62.7
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 1.1e-48 198.0 311 37.6
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 1.4e-48 197.6 150 60.0
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 4.3e-45 186.0 414 31.9
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 1.7e-41 174.1 121 63.6
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 9.2e-40 168.3 122 59.0
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 7.3e-37 158.7 103 64.1
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 3.1e-35 153.3 100 67.0
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 7.1e-32 142.1 167 49.1
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 2.5e-29 133.7 95 60.0
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 9.6e-29 131.7 84 64.3
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 4.0e-27 126.3 76 71.1
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 4.4e-26 122.9 85 61.2
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 6.0e-23 112.5 237 31.6
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 1.9e-21 107.5 337 27.3
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 2.6e-18 97.1 309 26.2
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 1.3e-17 94.7 70 61.4
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 1.1e-08 65.1 47 59.6
Sabra16G0075600 Salix brachista HOM05D006689 ORTHO05D008349 1.4e-08 64.7 42 64.3
Cfa021542 Carpinus fangiana HOM05D000750 ORTHO05D011662 1.9e-08 64.3 50 62.0
Hund19874 Selenicereus undatus HOM05D006689 ORTHO05D008349 2.7e-07 60.5 44 54.5


User provided reference genes

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