Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 6.0e-146 520.8 253 100.0
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 6.9e-86 321.2 223 68.6
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 3.8e-84 315.5 234 66.2
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 1.9e-83 313.2 225 67.1
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 6.1e-82 308.1 224 68.8
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 7.9e-82 307.8 222 65.3
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.4e-81 307.0 218 68.8
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 5.1e-81 305.1 225 66.2
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 2.0e-80 303.1 240 60.4
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 2.6e-80 302.8 224 65.2
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 3.3e-80 302.4 225 64.9
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 2.8e-79 299.3 224 64.3
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 4.8e-79 298.5 224 62.1
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 6.3e-79 298.1 225 64.0
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 2.0e-77 293.1 221 64.7
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 4.5e-77 292.0 247 59.9
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 5.9e-77 291.6 228 64.0
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.0e-76 288.5 224 63.8
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 6.5e-76 288.1 223 62.8
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.4e-75 287.0 223 63.2
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 1.9e-75 286.6 231 60.2
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 2.5e-75 286.2 238 60.5
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 7.2e-75 284.6 215 64.7
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 9.4e-75 284.3 221 61.1
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 2.7e-74 282.7 213 64.8
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 2.7e-74 282.7 264 55.7
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 3.6e-74 282.3 224 60.3
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 3.6e-74 282.3 224 60.7
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 6.1e-74 281.6 282 52.5
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 6.1e-74 281.6 223 60.1
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 7.9e-74 281.2 223 60.1
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 6.7e-73 278.1 223 59.2
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 8.8e-73 277.7 223 60.5
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 8.8e-73 277.7 220 61.4
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.5e-72 276.9 223 58.7
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 3.3e-72 275.8 223 61.0
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 4.4e-72 275.4 225 62.7
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.7e-71 273.5 225 62.2
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 2.2e-71 273.1 225 58.2
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.8e-71 272.7 226 60.2
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 3.7e-71 272.3 223 64.1
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 1.1e-70 270.8 223 61.4
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.4e-70 270.4 223 59.6
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.4e-70 270.4 223 58.3
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 1.8e-70 270.0 223 57.8
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 2.4e-70 269.6 223 57.8
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 2.0e-69 266.5 223 58.3
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.6e-69 266.2 215 60.9
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 4.5e-69 265.4 223 58.7
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 1.3e-68 263.8 225 57.3
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.3e-68 263.8 223 59.6
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 3.8e-68 262.3 221 58.4
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 8.5e-68 261.2 221 60.2
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-67 260.8 221 60.2
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.9e-67 260.0 221 59.7
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 3.2e-67 259.2 225 56.4
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 3.2e-67 259.2 224 58.0
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 4.2e-67 258.8 220 57.7
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 5.5e-67 258.5 210 61.9
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 7.2e-67 258.1 223 54.7
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 7.2e-67 258.1 223 54.7
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 9.4e-67 257.7 223 55.2
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.2e-66 257.3 216 59.7
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.6e-66 255.8 221 58.8
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 8.0e-66 254.6 220 57.7
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 1.8e-65 253.4 213 59.2
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 3.0e-65 252.7 220 57.7
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 6.7e-65 251.5 222 56.3
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 4.4e-64 248.8 211 59.2
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 5.7e-64 248.4 221 55.7
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 7.5e-64 248.1 208 59.6
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 7.5e-64 248.1 223 55.2
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 9.7e-64 247.7 218 55.5
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 9.7e-64 247.7 218 55.5
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 1.3e-63 247.3 221 55.7
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.7e-63 245.7 223 55.6
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 4.8e-63 245.4 221 53.4
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.1e-62 244.2 211 56.4
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 1.1e-62 244.2 211 56.4
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 1.1e-62 244.2 211 56.4
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 9.1e-62 241.1 221 53.8
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 3.5e-61 239.2 211 54.5
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 5.9e-61 238.4 211 56.4
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.0e-60 237.7 211 55.0
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.7e-60 236.9 214 56.5
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 2.9e-60 236.1 211 54.5
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 2.9e-60 236.1 211 54.5
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 7.2e-59 231.5 222 53.6
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.7e-58 229.6 212 54.2
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 2.7e-58 229.6 210 54.3
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.0e-57 227.6 211 53.6
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.0e-57 227.6 224 54.9
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 1.8e-57 226.9 211 53.6
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 8.8e-57 224.6 211 54.5
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 7.5e-56 221.5 212 53.3
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 3.1e-54 216.1 218 48.2
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 7.0e-54 214.9 220 52.7
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.2e-53 214.2 188 52.7
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.5e-53 212.2 186 58.1
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 7.7e-53 211.5 214 52.3
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.3e-52 210.7 220 48.2
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 4.2e-51 205.7 213 47.4
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 2.1e-50 203.4 231 46.3
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 6.1e-50 201.8 221 48.4
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 3.0e-49 199.5 145 65.5
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.0e-49 199.5 148 64.9
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 5.2e-49 198.7 212 51.4
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 8.9e-49 198.0 168 58.9
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 4.4e-48 195.7 210 51.4
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.0e-46 188.3 221 47.1
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 1.6e-45 187.2 225 46.7
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 2.9e-44 183.0 210 48.1
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 3.8e-44 182.6 210 48.1
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 6.6e-44 181.8 137 59.9
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.9e-43 180.3 176 50.6
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.2e-42 177.6 233 41.2
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 5.2e-41 172.2 219 42.9
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 2.0e-40 170.2 128 64.8
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 2.9e-39 166.4 219 43.4
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 1.4e-38 164.1 154 56.5
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 2.7e-37 159.8 224 37.5
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 7.3e-35 151.8 239 35.1
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 9.5e-35 151.4 242 37.6
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 2.3e-33 146.7 214 43.0
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 2.3e-33 146.7 219 42.9
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.9e-31 139.8 106 62.3
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 2.4e-30 136.7 220 38.2
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 5.0e-28 129.0 164 43.3
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.5e-27 127.5 216 38.4
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 1.2e-26 124.4 118 52.5
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 7.5e-24 115.2 111 55.0
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 7.5e-24 115.2 119 48.7
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.3e-23 114.4 126 49.2
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 5.6e-19 99.0 132 41.7
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 8.9e-17 91.7 112 45.5
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 8.9e-17 91.7 62 64.5
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.5e-16 90.9 107 44.9
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 3.4e-16 89.7 56 66.1
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 4.4e-16 89.4 99 46.5
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 5.6e-11 72.4 79 45.6
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 2.0e-08 63.9 169 29.6
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 7.6e-08 62.0 79 39.2
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 1.4e-06 57.8 179 26.8
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.4e-06 57.8 173 30.6
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 1.9e-06 57.4 188 24.5
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 4.2e-06 56.2 73 39.7


User provided reference genes

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