Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 1.9e-56 222.2 108 100.0
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 7.4e-45 183.7 108 79.6
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 4.8e-44 181.0 108 79.6
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 4.0e-43 177.9 108 76.9
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 2.6e-42 175.3 104 79.8
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 7.6e-42 173.7 108 75.9
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.3e-41 172.9 108 75.9
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 4.9e-41 171.0 108 75.0
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 1.9e-40 169.1 108 74.1
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 2.5e-40 168.7 109 78.0
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 3.2e-40 168.3 109 75.2
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 4.2e-40 167.9 108 74.1
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 7.1e-40 167.2 108 74.1
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 2.7e-39 165.2 108 73.1
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 2.7e-39 165.2 108 73.1
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 5.1e-38 161.0 108 71.3
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 5.1e-38 161.0 108 72.2
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.9e-37 159.1 109 70.6
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 3.3e-37 158.3 108 68.5
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 7.4e-37 157.1 108 70.4
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 7.4e-37 157.1 108 69.4
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 9.7e-37 156.8 108 67.6
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 9.7e-37 156.8 109 71.6
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 1.3e-36 156.4 109 71.6
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 1.3e-36 156.4 109 68.8
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 67.6
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 67.6
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 67.6
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 67.6
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 68.5
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.6e-36 156.0 109 71.6
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.8e-36 155.2 108 67.6
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 3.7e-36 154.8 108 67.6
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 3.7e-36 154.8 108 68.5
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 3.7e-36 154.8 109 70.6
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 3.7e-36 154.8 108 68.5
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 3.7e-36 154.8 108 69.4
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 6.3e-36 154.1 108 66.7
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 6.3e-36 154.1 108 66.7
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 65.7
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 66.7
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 66.7
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 65.7
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 68.5
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.1e-35 153.3 108 66.7
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.8e-35 152.5 109 68.8
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 2.4e-35 152.1 109 67.0
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.4e-35 152.1 108 69.4
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 68.5
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 4.1e-35 151.4 108 65.7
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 4.1e-35 151.4 90 77.8
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 4.1e-35 151.4 109 67.0
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 5.3e-35 151.0 108 65.7
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 6.9e-35 150.6 109 67.9
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 6.9e-35 150.6 109 66.1
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 6.9e-35 150.6 108 65.7
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 6.9e-35 150.6 109 70.6
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 9.0e-35 150.2 108 69.4
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 9.0e-35 150.2 107 66.4
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 64.8
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 64.8
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.2e-34 149.8 109 68.8
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.2e-34 149.8 109 68.8
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 63.0
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 2.0e-34 149.1 109 68.8
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 3.4e-34 148.3 108 64.8
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 3.4e-34 148.3 108 65.7
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 5.9e-34 147.5 108 65.7
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 7.6e-34 147.1 108 65.7
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 64.8
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 2.9e-33 145.2 110 64.5
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.9e-33 145.2 108 64.8
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 3.8e-33 144.8 108 63.9
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 5.0e-33 144.4 108 63.0
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 5.0e-33 144.4 108 67.6
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 6.5e-33 144.1 109 67.0
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 6.5e-33 144.1 108 62.0
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 6.5e-33 144.1 108 63.9
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 6.5e-33 144.1 108 63.9
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 8.5e-33 143.7 108 62.0
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.4e-32 142.9 108 66.7
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 2.5e-32 142.1 108 62.0
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.5e-32 142.1 108 62.0
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 2.5e-32 142.1 108 63.0
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.2e-32 141.7 109 63.3
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 3.2e-32 141.7 109 64.2
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 4.2e-32 141.4 109 62.4
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 5.5e-32 141.0 108 62.0
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 63.9
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 2.1e-31 139.0 107 61.7
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 2.7e-31 138.7 108 62.0
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 3.6e-31 138.3 109 62.4
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 3.6e-31 138.3 109 61.5
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 3.6e-31 138.3 109 62.4
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 4.6e-31 137.9 108 59.3
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 7.9e-31 137.1 110 60.9
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 7.9e-31 137.1 93 71.0
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 60.2
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 8.8e-30 133.7 96 65.6
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.1e-29 133.3 84 78.6
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.5e-29 132.9 109 62.4
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.5e-29 132.9 84 78.6
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 2.5e-29 132.1 108 58.3
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 2.5e-29 132.1 108 58.3
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 4.3e-29 131.3 100 68.0
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 5.7e-29 131.0 108 60.2
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 5.7e-29 131.0 99 61.6
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 9.7e-29 130.2 108 57.4
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.3e-28 129.8 104 60.6
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.7e-28 129.4 108 55.6
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 2.2e-28 129.0 108 55.6
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 1.1e-27 126.7 92 67.4
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 1.4e-27 126.3 109 58.7
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 1.8e-27 125.9 112 58.0
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 2.4e-27 125.6 108 54.6
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 2.4e-27 125.6 86 70.9
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 2.4e-27 125.6 109 55.0
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 3.1e-27 125.2 109 59.6
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 3.1e-27 125.2 109 59.6
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 4.1e-27 124.8 89 66.3
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 5.3e-27 124.4 86 69.8
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 9.1e-27 123.6 109 57.8
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 2.6e-26 122.1 109 56.9
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 3.4e-26 121.7 86 68.6
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 3.4e-26 121.7 86 68.6
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 4.5e-26 121.3 86 68.6
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 7.7e-26 120.6 93 65.6
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.3e-25 119.8 89 66.3
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 1.3e-25 119.8 87 66.7
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 1.3e-25 119.8 109 56.9
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 2.2e-25 119.0 108 51.9
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 8.5e-25 117.1 87 67.8
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.1e-24 116.7 89 59.6
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 1.9e-24 115.9 86 65.1
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 2.5e-24 115.5 108 58.3
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 2.5e-24 115.5 108 49.1
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 3.2e-24 115.2 72 68.1
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 7.2e-24 114.0 88 67.0
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 9.4e-24 113.6 87 65.5
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 7.9e-23 110.5 89 60.7
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 3.9e-22 108.2 89 57.3
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 2.6e-21 105.5 88 62.5
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 9.7e-21 103.6 110 45.5
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.3e-20 103.2 86 62.8
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 8.2e-20 100.5 110 44.5
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 4.1e-19 98.2 66 75.8
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 1.0e-17 93.6 109 45.0
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 2.2e-17 92.4 107 42.1
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 2.9e-17 92.0 86 52.3
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 9.4e-16 87.0 82 59.8
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 6.1e-15 84.3 88 52.3
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 1.4e-14 83.2 74 62.2
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 2.6e-13 79.0 60 66.7
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 7.4e-13 77.4 112 42.9
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 7.0e-11 70.9 109 36.7
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 2.0e-10 69.3 110 38.2
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 1.3e-09 66.6 64 51.6
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 3.6e-07 58.5 41 68.3
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 6.1e-07 57.8 68 44.1
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 6.1e-07 57.8 68 44.1


User provided reference genes

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