Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 0.0e+00 1813.5 943 100.0
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.3e-273 946.8 969 54.0
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.9e-250 869.8 954 52.2
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 7.0e-232 808.1 889 50.7
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.6e-231 807.0 918 48.4
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 1.7e-230 803.5 949 48.5
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.9e-230 802.7 1105 46.2
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 7.5e-226 788.1 905 49.6
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.6e-223 780.4 1114 44.9
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 5.0e-222 775.4 1058 47.1
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 2.5e-221 773.1 897 51.2
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 1.0e-219 767.7 903 48.5
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 7.5e-218 761.5 997 43.7
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 3.8e-214 749.2 884 49.4
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 6.6e-214 748.4 910 50.3
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 4.2e-213 745.7 927 49.0
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 3.4e-210 736.1 1032 44.6
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.7e-209 733.8 926 45.1
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 2.8e-209 733.0 1036 44.8
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.4e-208 730.7 916 46.3
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 5.4e-208 728.8 921 45.5
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 5.9e-207 725.3 970 45.7
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.1e-205 721.1 918 46.8
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 1.2e-204 717.6 918 45.8
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.4e-203 714.1 957 42.5
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 4.0e-203 712.6 916 46.3
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 4.4e-202 709.1 1044 40.9
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 4.4e-202 709.1 1016 44.4
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.3e-201 707.6 921 44.8
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 3.5e-199 699.5 1050 40.6
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.3e-198 697.6 894 44.0
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 2.3e-198 696.8 778 50.1
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.3e-198 696.8 934 44.3
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 2.8e-196 689.9 934 44.2
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 5.8e-194 682.2 967 43.8
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 2.9e-193 679.9 887 46.7
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 4.9e-193 679.1 884 43.7
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 4.9e-193 679.1 903 42.9
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 8.3e-193 678.3 946 45.1
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 7.8e-191 671.8 917 46.5
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 6.6e-190 668.7 891 43.8
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 1.1e-189 667.9 906 44.0
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 2.5e-189 666.8 911 45.3
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.2e-188 664.5 962 44.1
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 2.1e-188 663.7 908 41.9
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 3.6e-188 662.9 1012 40.8
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 3.6e-188 662.9 1012 40.8
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 6.2e-188 662.1 1011 41.5
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 4.0e-187 659.4 897 44.4
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 6.8e-187 658.7 1091 37.2
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 4.4e-186 656.0 1012 40.5
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 1.7e-185 654.1 902 42.7
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 1.7e-185 654.1 911 42.0
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 4.9e-185 652.5 1048 42.3
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 6.4e-185 652.1 1106 38.2
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.1e-184 651.4 894 42.2
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 1.1e-184 651.4 900 42.7
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.1e-184 651.4 894 42.2
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 1.4e-184 651.0 910 42.3
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 1.4e-184 651.0 935 43.9
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 2.4e-184 650.2 969 42.3
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 4.1e-184 649.4 897 43.6
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 4.1e-184 649.4 948 43.5
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 5.4e-184 649.0 1003 40.4
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 7.1e-184 648.7 886 43.5
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 7.1e-184 648.7 906 42.2
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 9.2e-184 648.3 922 42.2
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 1.6e-183 647.5 893 44.7
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 2.1e-183 647.1 923 42.1
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.7e-182 644.0 893 44.3
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 5.1e-182 642.5 998 38.8
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 1.1e-181 641.3 954 42.8
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 6.2e-180 635.6 726 49.3
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 6.2e-180 635.6 913 43.7
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 1.1e-179 634.8 1115 36.4
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.4e-179 633.6 1018 41.8
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 5.2e-179 632.5 1008 39.7
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 9.9e-178 628.2 996 39.8
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 1.1e-176 624.8 990 39.8
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 1.9e-176 624.0 925 44.8
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 4.2e-176 622.9 1056 41.6
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 1.2e-175 621.3 988 39.0
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 3.5e-175 619.8 957 41.2
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 1.4e-171 607.8 1193 35.5
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 1.2e-170 604.7 936 42.4
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 2.6e-170 603.6 973 39.5
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.4e-168 597.8 1069 37.5
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 7.1e-168 595.5 1070 41.1
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 9.3e-168 595.1 1079 40.5
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 2.5e-165 587.0 988 40.8
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.8e-163 580.9 778 43.6
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 9.0e-163 578.6 986 38.7
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.6e-162 577.0 796 45.7
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 5.8e-162 575.9 903 38.3
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 5.1e-158 562.8 528 54.4
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.5e-149 534.6 661 49.5
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.9e-145 520.4 667 45.7
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 4.9e-145 519.6 882 37.6
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 4.9e-145 519.6 1175 31.4
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.9e-143 512.3 811 41.9
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 1.0e-142 511.9 939 42.9
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 7.4e-141 505.8 878 37.1
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 5.5e-136 489.6 951 33.3
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.9e-129 467.2 504 48.8
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 1.4e-126 458.4 629 47.7
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 9.1e-123 445.7 666 45.0
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.2e-114 418.7 812 36.2
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 2.0e-114 417.9 636 39.5
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 3.1e-107 394.0 288 60.4
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.3e-105 388.7 358 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 3.7e-100 370.5 864 30.8
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 1.8e-99 368.2 893 29.0
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 1.0e-97 362.5 857 28.4
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 4.1e-91 340.5 325 53.5
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 4.3e-88 330.5 564 39.5
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.1e-83 315.8 292 53.4
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 8.1e-63 246.5 284 46.1
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 4.2e-59 234.2 213 53.5
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 1.3e-57 229.2 213 52.1
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.6e-55 221.1 269 46.8
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.4e-54 219.2 210 55.2
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.3e-52 212.6 274 44.9
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 4.2e-51 207.6 291 43.3
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 7.1e-51 206.8 510 32.2
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.5e-48 198.4 678 26.4
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 9.0e-46 189.9 208 48.1
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.6e-42 179.1 254 42.1
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 2.7e-42 178.3 131 64.1
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 2.1e-39 168.7 272 36.4
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 5.3e-38 164.1 411 27.5
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.9e-35 155.6 207 42.0
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.6e-34 151.0 242 39.3
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 8.2e-31 140.2 102 62.7
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 4.1e-30 137.9 373 31.4
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.8e-28 131.3 85 67.1
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 6.5e-28 130.6 205 39.0
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 2.5e-27 128.6 205 40.0
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 4.3e-24 117.9 164 43.3
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 2.8e-23 115.2 205 38.5
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 5.0e-20 104.4 149 44.3
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 9.4e-19 100.1 183 34.4
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 1.8e-17 95.9 196 33.7
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.8e-17 93.6 537 30.4
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 3.7e-15 88.2 107 45.8
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 8.2e-15 87.0 200 32.5
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 2.4e-14 85.5 137 39.4
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.5e-13 82.8 95 45.3
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 8.8e-09 67.0 51 52.9
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 8.2e-07 60.5 43 62.8


User provided reference genes

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