Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 6.0e-103 377.5 185 100.0
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 6.6e-86 320.9 185 80.5
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 3.3e-85 318.5 185 80.5
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 4.3e-85 318.2 185 79.5
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 2.1e-84 315.8 183 80.3
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 2.1e-84 315.8 184 77.7
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 8.1e-84 313.9 185 80.0
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 6.9e-83 310.8 185 76.8
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 2.0e-82 309.3 185 76.2
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 2.6e-82 308.9 185 78.4
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 7.6e-82 307.4 185 76.2
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 1.3e-81 306.6 184 74.5
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 2.9e-81 305.4 185 77.8
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 3.8e-81 305.1 183 74.9
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 1.9e-80 302.8 185 77.8
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 1.9e-80 302.8 182 78.0
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 2.4e-80 302.4 185 76.2
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 5.4e-80 301.2 182 75.3
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 5.4e-80 301.2 182 74.7
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 7.1e-80 300.8 185 73.5
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 2.7e-79 298.9 185 74.6
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 7.8e-79 297.4 184 73.4
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 1.3e-78 296.6 182 74.7
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 1.7e-78 296.2 185 71.9
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 1.7e-78 296.2 185 73.0
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 3.0e-78 295.4 185 72.4
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 3.0e-78 295.4 180 74.4
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 8.7e-78 293.9 185 75.1
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 8.7e-78 293.9 182 72.5
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 1.1e-77 293.5 181 71.3
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 1.1e-77 293.5 181 71.3
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.5e-77 293.1 171 80.1
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 1.9e-77 292.7 185 74.1
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 1.9e-77 292.7 182 74.2
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 5.6e-77 291.2 180 71.1
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 5.6e-77 291.2 182 70.3
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 7.3e-77 290.8 176 77.3
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 9.6e-77 290.4 182 70.9
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 9.6e-77 290.4 180 76.1
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 9.6e-77 290.4 182 70.3
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 4.8e-76 288.1 182 72.0
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 4.8e-76 288.1 182 72.0
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 4.8e-76 288.1 185 71.4
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 4.8e-76 288.1 182 73.1
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 4.8e-76 288.1 185 71.9
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 6.2e-76 287.7 185 71.4
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 8.1e-76 287.3 178 73.0
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 1.1e-75 287.0 183 71.6
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 1.4e-75 286.6 185 70.8
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 1.8e-75 286.2 181 70.7
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 1.8e-75 286.2 180 73.3
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 1.8e-75 286.2 181 74.0
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 1.8e-75 286.2 185 71.9
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 1.8e-75 286.2 182 75.3
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 2.4e-75 285.8 185 70.3
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 4.0e-75 285.0 180 73.3
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 6.9e-75 284.3 185 75.1
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 6.9e-75 284.3 185 70.3
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 9.0e-75 283.9 181 73.5
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 1.2e-74 283.5 181 72.4
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 1.2e-74 283.5 181 72.4
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 1.5e-74 283.1 181 71.3
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 3.4e-74 282.0 185 71.9
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 3.4e-74 282.0 210 63.8
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 5.8e-74 281.2 182 68.7
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 5.8e-74 281.2 181 71.3
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 5.8e-74 281.2 181 71.3
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 5.8e-74 281.2 168 78.6
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.3e-73 280.0 182 68.1
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 1.3e-73 280.0 194 66.0
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 1.3e-73 280.0 182 70.9
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 2.2e-73 279.3 182 71.4
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 2.2e-73 279.3 182 72.5
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 2.9e-73 278.9 182 68.1
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 2.9e-73 278.9 182 68.1
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 3.8e-73 278.5 180 69.4
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 3.8e-73 278.5 185 69.7
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 4.9e-73 278.1 192 69.8
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 6.4e-73 277.7 182 68.1
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 8.4e-73 277.3 182 68.1
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 1.4e-72 276.6 182 67.6
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 1.9e-72 276.2 182 67.6
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 4.2e-72 275.0 180 67.2
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 9.3e-72 273.9 182 69.8
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 9.3e-72 273.9 182 70.3
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 4.6e-71 271.6 181 70.2
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.3e-70 270.0 229 60.7
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 3.9e-70 268.5 208 61.1
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 5.1e-70 268.1 179 69.8
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 8.7e-70 267.3 182 67.6
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 2.5e-69 265.8 180 67.2
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 5.6e-69 264.6 180 66.7
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 2.8e-68 262.3 176 69.3
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 4.8e-68 261.5 183 65.0
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 4.8e-68 261.5 177 68.9
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 4.0e-67 258.5 182 66.5
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 4.0e-67 258.5 182 66.5
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 4.0e-67 258.5 182 68.1
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 2.0e-66 256.1 185 66.5
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 3.4e-66 255.4 180 65.6
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 3.8e-65 251.9 181 63.0
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 8.4e-65 250.8 182 62.1
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 2.4e-64 249.2 199 62.8
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 1.6e-63 246.5 182 62.6
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 5.1e-62 241.5 181 59.1
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.5e-61 240.0 180 61.1
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 3.3e-61 238.8 180 61.1
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 5.6e-61 238.0 187 61.0
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 9.6e-61 237.3 180 58.9
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 2.8e-60 235.7 180 62.2
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.1e-59 233.8 178 59.6
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 1.4e-59 233.4 187 60.4
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 4.2e-56 221.9 181 58.6
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 1.2e-55 220.3 128 79.7
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 6.0e-55 218.0 187 56.7
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 2.3e-54 216.1 135 72.6
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 9.6e-53 210.7 181 55.2
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 3.7e-52 208.8 180 58.3
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 1.1e-51 207.2 140 67.1
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 5.9e-50 201.4 179 57.5
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 7.6e-50 201.1 182 52.7
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 1.1e-48 197.2 128 72.7
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 4.6e-47 191.8 170 52.9
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 1.0e-46 190.7 184 49.5
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 1.6e-44 183.3 137 61.3
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 3.7e-44 182.2 180 48.3
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 3.7e-44 182.2 172 54.7
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 1.2e-42 177.2 132 61.4
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 2.3e-38 162.9 158 54.4
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 9.7e-37 157.5 113 61.9
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 6.3e-36 154.8 126 62.7
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 7.9e-31 137.9 93 66.7
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 1.1e-29 134.0 155 49.0
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 4.8e-28 128.6 119 58.0
MCO16G241 Micromonas commoda HOM05D005095 ORTHO05D006156 6.5e-25 118.2 180 43.3
CAN.G397.3 Capsicum annuum HOM05D005095 ORTHO05D006156 3.0e-14 82.8 45 77.8
MD04G1094600 Malus domestica HOM05D005095 ORTHO05D245281 3.7e-12 75.9 69 53.6
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 1.6e-10 70.5 45 66.7
Sabra14G0058200 Salix brachista HOM05D005095 ORTHO05D006156 3.5e-10 69.3 94 45.7
TAR628G0764 Trochodendron aralioides HOM05D005095 ORTHO05D006156 5.9e-10 68.6 45 64.4
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 2.5e-08 63.2 45 64.4


User provided reference genes

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