Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 8.0e-42 173.3 87 100.0
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.8e-16 87.4 85 55.3
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 2.9e-15 85.1 93 55.9
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 2.9e-15 85.1 93 53.8
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 4.2e-14 81.3 83 55.4
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 4.2e-14 81.3 90 51.1
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.4e-14 80.9 92 50.0
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 9.2e-14 80.1 84 58.3
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 1.2e-13 79.7 92 47.8
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.2e-13 79.7 75 61.3
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-13 79.7 75 61.3
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-13 79.7 75 61.3
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-13 79.7 75 61.3
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.2e-13 79.7 74 62.2
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 1.6e-13 79.3 78 59.0
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.6e-13 79.3 83 51.8
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.7e-13 78.6 74 59.5
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 3.5e-13 78.2 84 52.4
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 4.6e-13 77.8 78 55.1
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 6.0e-13 77.4 84 46.4
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 7.8e-13 77.0 84 53.6
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.8e-13 77.0 79 54.4
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.0e-12 76.6 82 56.1
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.0e-12 76.6 83 51.8
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.0e-12 76.6 95 47.4
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.7e-12 75.9 87 49.4
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.7e-12 75.9 84 50.0
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.7e-12 75.9 82 54.9
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.0e-12 75.1 80 53.8
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.0e-12 75.1 50 68.0
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 3.0e-12 75.1 74 54.1
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.9e-12 74.7 80 55.0
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 3.9e-12 74.7 78 55.1
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 5.1e-12 74.3 95 42.1
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 8.7e-12 73.6 87 50.6
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 8.7e-12 73.6 76 50.0
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 8.7e-12 73.6 90 46.7
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 8.7e-12 73.6 89 50.6
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 8.7e-12 73.6 75 52.0
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 8.7e-12 73.6 76 56.6
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.5e-11 72.8 82 45.1
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.9e-11 72.4 94 41.5
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.9e-11 72.4 88 48.9
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.5e-11 72.0 87 42.5
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.3e-11 71.6 82 46.3
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.3e-11 71.6 88 47.7
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 3.3e-11 71.6 46 69.6
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 4.3e-11 71.2 79 50.6
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.3e-11 71.2 87 41.4
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 4.3e-11 71.2 87 49.4
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.6e-11 70.9 89 44.9
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.6e-11 70.9 88 43.2
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 7.3e-11 70.5 86 48.8
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 9.6e-11 70.1 83 45.8
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.3e-10 69.7 88 48.9
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.6e-10 69.3 88 48.9
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.6e-10 69.3 77 50.6
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 2.1e-10 68.9 91 46.2
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.1e-10 68.9 78 44.9
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.1e-10 68.9 86 41.9
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.1e-10 68.9 87 41.4
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.1e-10 68.9 88 42.0
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 2.1e-10 68.9 78 47.4
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.1e-10 68.9 87 48.3
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 2.1e-10 68.9 83 45.8
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.8e-10 68.6 82 43.9
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 2.8e-10 68.6 81 45.7
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.8e-10 68.6 50 68.0
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 2.8e-10 68.6 93 45.2
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.8e-10 68.6 41 65.9
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 3.6e-10 68.2 78 44.9
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 3.6e-10 68.2 83 49.4
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 4.8e-10 67.8 93 43.0
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.8e-10 67.8 95 40.0
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 4.8e-10 67.8 91 44.0
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 4.8e-10 67.8 88 42.0
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.2e-10 67.4 82 42.7
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.2e-10 67.4 89 44.9
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 8.1e-10 67.0 93 40.9
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 8.1e-10 67.0 89 40.4
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 8.1e-10 67.0 82 45.1
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 8.1e-10 67.0 46 65.2
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 8.1e-10 67.0 84 46.4
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-09 66.6 87 44.8
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-09 66.6 87 43.7
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.1e-09 66.6 39 69.2
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.4e-09 66.2 35 80.0
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 1.4e-09 66.2 80 46.2
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.4e-09 66.2 87 43.7
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.4e-09 66.2 85 44.7
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.4e-09 66.2 85 44.7
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.4e-09 66.2 88 46.6
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.8e-09 65.9 84 46.4
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.8e-09 65.9 79 45.6
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.8e-09 65.9 47 63.8
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.4e-09 65.5 87 43.7
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 2.4e-09 65.5 88 40.9
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.4e-09 65.5 84 44.0
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.4e-09 65.5 41 63.4
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 2.4e-09 65.5 93 36.6
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.4e-09 65.5 86 43.0
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.1e-09 65.1 87 43.7
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 4.0e-09 64.7 87 43.7
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.0e-09 64.7 84 46.4
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 4.0e-09 64.7 80 41.2
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 5.3e-09 64.3 58 51.7
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 5.3e-09 64.3 81 49.4
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 6.9e-09 63.9 81 46.9
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 6.9e-09 63.9 55 54.5
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.2e-08 63.2 92 40.2
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 1.5e-08 62.8 70 45.7
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.5e-08 62.8 54 59.3
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.5e-08 62.8 87 41.4
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.5e-08 62.8 42 66.7
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 2.0e-08 62.4 77 42.9
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 2.0e-08 62.4 59 54.2
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 2.6e-08 62.0 72 47.2
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.6e-08 62.0 46 60.9
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.6e-08 62.0 86 45.3
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.4e-08 61.6 81 45.7
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.4e-08 61.6 88 43.2
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 3.4e-08 61.6 53 49.1
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 3.4e-08 61.6 101 40.6
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 4.4e-08 61.2 89 41.6
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 4.4e-08 61.2 48 56.2
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 4.4e-08 61.2 101 39.6
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 5.8e-08 60.8 72 47.2
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 5.8e-08 60.8 35 71.4
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 5.8e-08 60.8 47 51.1
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 5.8e-08 60.8 47 51.1
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 5.8e-08 60.8 40 65.0
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 7.6e-08 60.5 91 42.9
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 7.6e-08 60.5 100 40.0
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 7.6e-08 60.5 83 47.0
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 7.6e-08 60.5 82 46.3
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 9.9e-08 60.1 87 43.7
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 9.9e-08 60.1 92 46.7
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 9.9e-08 60.1 88 45.5
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.3e-07 59.7 87 44.8
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.7e-07 59.3 43 60.5
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.7e-07 59.3 42 61.9
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 2.2e-07 58.9 80 38.8
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.9e-07 58.5 90 45.6
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 2.9e-07 58.5 90 45.6
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 2.9e-07 58.5 43 62.8
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 2.9e-07 58.5 47 51.1
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 2.9e-07 58.5 96 39.6
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 3.8e-07 58.2 52 50.0
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.9e-07 57.8 88 43.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 4.9e-07 57.8 75 37.3
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 6.4e-07 57.4 85 41.2
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 6.4e-07 57.4 85 41.2
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 6.4e-07 57.4 88 44.3
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 8.4e-07 57.0 52 53.8
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 8.4e-07 57.0 52 53.8
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 8.4e-07 57.0 52 53.8
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 8.4e-07 57.0 52 53.8
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 8.4e-07 57.0 87 41.4
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 8.4e-07 57.0 73 43.8
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 1.4e-06 56.2 43 60.5
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.4e-06 56.2 55 47.3
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.4e-06 56.2 46 52.2
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 1.4e-06 56.2 41 56.1
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.9e-06 55.8 47 53.2
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.9e-06 55.8 52 48.1
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.9e-06 55.8 89 42.7
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.4e-06 55.5 47 55.3
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.4e-06 55.5 41 56.1
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 9.3e-06 53.5 96 34.4
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 9.3e-06 53.5 95 38.9


User provided reference genes

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