Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 1.9e-47 192.2 98 100.0
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 8.2e-19 97.1 90 62.2
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.4e-18 96.3 91 57.1
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.8e-18 95.9 91 57.1
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 1.8e-18 95.9 91 57.1
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 4.1e-18 94.7 69 71.0
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 4.1e-18 94.7 69 71.0
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 5.3e-18 94.4 69 69.6
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 5.3e-18 94.4 69 72.5
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 1.2e-17 93.2 78 65.4
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 1.2e-17 93.2 66 71.2
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 2.6e-17 92.0 66 69.7
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 2.6e-17 92.0 59 79.7
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 3.5e-17 91.7 72 68.1
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 3.5e-17 91.7 66 72.7
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 3.5e-17 91.7 78 64.1
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 3.5e-17 91.7 78 62.8
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 4.5e-17 91.3 69 65.2
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 4.5e-17 91.3 61 77.0
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 4.5e-17 91.3 78 64.1
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 5.9e-17 90.9 66 71.2
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 5.9e-17 90.9 69 69.6
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 5.9e-17 90.9 66 69.7
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 1.7e-16 89.4 62 77.4
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 1.7e-16 89.4 66 71.2
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 2.9e-16 88.6 87 58.6
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 2.9e-16 88.6 75 62.7
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 3.8e-16 88.2 59 76.3
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 5.0e-16 87.8 80 58.8
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 6.5e-16 87.4 66 68.2
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 8.5e-16 87.0 56 76.8
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 8.5e-16 87.0 69 66.7
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 8.5e-16 87.0 66 68.2
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 8.5e-16 87.0 68 64.7
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 8.5e-16 87.0 80 57.5
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.1e-15 86.7 68 66.2
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 1.1e-15 86.7 87 55.2
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 1.5e-15 86.3 76 63.2
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 1.5e-15 86.3 75 64.0
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 1.5e-15 86.3 80 63.8
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 1.9e-15 85.9 86 58.1
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.9e-15 85.9 68 66.2
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 1.9e-15 85.9 62 71.0
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 1.9e-15 85.9 80 57.5
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 3.2e-15 85.1 60 70.0
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 5.5e-15 84.3 82 57.3
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 7.2e-15 84.0 86 55.8
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 1.2e-14 83.2 62 69.4
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 1.6e-14 82.8 58 74.1
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 1.6e-14 82.8 72 62.5
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 1.6e-14 82.8 76 60.5
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 2.1e-14 82.4 86 57.0
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 3.6e-14 81.6 76 60.5
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 3.6e-14 81.6 77 58.4
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 4.7e-14 81.3 60 71.7
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 4.7e-14 81.3 75 61.3
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 4.7e-14 81.3 74 60.8
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 6.1e-14 80.9 66 62.1
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 6.1e-14 80.9 91 50.5
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 8.0e-14 80.5 66 63.6
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 8.0e-14 80.5 66 63.6
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 1.0e-13 80.1 87 55.2
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 1.0e-13 80.1 60 66.7
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 1.4e-13 79.7 66 62.1
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 1.4e-13 79.7 66 62.1
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 1.8e-13 79.3 54 75.9
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.3e-13 79.0 93 54.8
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 3.0e-13 78.6 76 59.2
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 3.0e-13 78.6 60 63.3
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 4.0e-13 78.2 76 59.2
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 4.0e-13 78.2 66 62.1
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 6.8e-13 77.4 76 59.2
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 6.8e-13 77.4 66 62.1
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 6.8e-13 77.4 71 56.3
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 8.8e-13 77.0 66 57.6
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 2.0e-12 75.9 84 56.0
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 2.6e-12 75.5 91 49.5
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 9.8e-12 73.6 50 74.0
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 1.7e-11 72.8 66 59.1
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 1.7e-11 72.8 69 55.1
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 1.8e-10 69.3 59 59.3
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 4.1e-10 68.2 98 45.9
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 2.0e-09 65.9 62 54.8
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 4.5e-09 64.7 57 57.9
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 4.5e-09 64.7 55 54.5
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 4.5e-09 64.7 88 46.6
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 5.9e-09 64.3 64 50.0
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 7.7e-09 63.9 60 53.3
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 7.7e-09 63.9 59 57.6
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 1.1e-07 60.1 72 45.8
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 2.5e-07 58.9 40 70.0
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 3.2e-07 58.5 61 45.9
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 3.2e-07 58.5 61 45.9
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 3.2e-07 58.5 56 53.6
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 2.7e-06 55.5 61 49.2
Atru.chr2.2826 Acer truncatum HOM05D007448 ORTHO05D009392 3.6e-06 55.1 41 73.2
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 6.1e-06 54.3 81 42.0
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 8.0e-06 53.9 59 49.2


User provided reference genes

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