Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 8.5e-249 863.2 441 100.0
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 4.2e-179 631.7 441 69.8
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 1.2e-178 630.2 441 69.8
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 1.6e-175 619.8 435 71.7
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 2.6e-173 612.5 441 68.7
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 1.7e-172 609.8 437 69.6
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 2.1e-170 602.8 491 62.9
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 2.7e-170 602.4 439 68.6
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 2.7e-170 602.4 464 67.2
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 6.7e-169 597.8 440 67.5
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 9.7e-168 594.0 432 68.1
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.3e-167 593.6 432 68.1
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 3.1e-166 589.0 438 66.2
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 1.3e-164 583.6 470 62.1
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 1.4e-163 580.1 441 66.0
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 1.9e-163 579.7 436 64.2
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 4.2e-163 578.6 438 64.8
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 4.2e-163 578.6 435 67.4
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 7.2e-163 577.8 418 68.7
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.2e-162 577.0 440 65.9
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 1.2e-162 577.0 432 65.7
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 1.2e-162 577.0 437 64.8
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 4.6e-162 575.1 443 65.7
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 1.0e-161 573.9 440 66.8
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 1.8e-161 573.2 441 64.9
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 8.8e-161 570.9 439 64.2
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.7e-159 566.6 452 63.7
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 2.8e-159 565.8 435 65.1
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.8e-159 565.1 452 63.5
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 3.1e-158 562.4 436 64.7
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 2.6e-157 559.3 435 63.9
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.5e-157 558.5 469 61.4
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 1.0e-156 557.4 435 63.4
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 2.9e-156 555.8 434 64.5
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 2.9e-156 555.8 432 64.1
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 3.8e-156 555.4 567 53.4
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 3.2e-155 552.4 436 63.5
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.2e-154 550.4 437 62.2
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.6e-154 550.1 467 60.6
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 2.1e-154 549.7 437 63.4
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 4.7e-154 548.5 429 62.5
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 4.7e-154 548.5 430 61.2
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 7.9e-154 547.7 434 62.7
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 8.8e-153 544.3 434 62.0
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 1.1e-152 543.9 467 57.2
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 3.3e-152 542.3 437 61.3
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 7.4e-152 541.2 509 57.0
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 4.8e-151 538.5 435 62.3
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 4.8e-151 538.5 435 62.3
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 1.1e-150 537.3 381 69.3
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.8e-150 536.6 443 62.5
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 3.1e-150 535.8 449 61.2
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 5.3e-150 535.0 444 60.6
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 1.2e-149 533.9 440 61.8
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 3.5e-149 532.3 464 60.6
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.3e-148 530.4 387 66.4
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 3.8e-148 528.9 380 68.9
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 1.2e-146 523.9 362 70.2
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 1.2e-146 523.9 383 66.8
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 8.0e-146 521.2 431 63.1
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 3.0e-145 519.2 550 49.6
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 5.2e-145 518.5 429 59.9
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 5.2e-145 518.5 387 64.9
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 5.7e-144 515.0 432 58.6
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 8.2e-143 511.1 438 59.1
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 9.1e-142 507.7 433 58.4
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 9.1e-142 507.7 433 58.4
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.7e-140 503.4 432 58.6
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 2.2e-140 503.1 433 58.4
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 6.5e-140 501.5 432 58.3
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 1.5e-139 500.4 438 58.9
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 2.5e-139 499.6 432 57.9
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 3.2e-139 499.2 454 55.9
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 4.2e-139 498.8 433 58.2
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 2.1e-138 496.5 432 57.4
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 3.0e-137 492.7 456 59.6
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 5.7e-136 488.4 438 56.6
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 7.7e-133 478.0 430 56.5
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 3.2e-131 472.6 410 59.5
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 9.4e-131 471.1 370 67.0
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 7.5e-128 461.5 429 55.2
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 7.0e-126 454.9 430 54.2
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 4.0e-121 439.1 322 69.3
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 2.7e-117 426.4 317 66.2
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 3.9e-116 422.5 395 55.2
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 3.6e-114 416.0 422 51.4
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 1.5e-112 410.6 429 49.0
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 3.7e-111 406.0 320 64.7
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 7.8e-109 398.3 438 48.9
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 1.9e-107 393.7 403 53.6
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 7.5e-104 381.7 287 65.2
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 4.9e-103 379.0 313 62.6
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 1.6e-101 374.0 431 46.2
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.9e-95 353.2 284 60.6
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 1.1e-94 351.3 361 51.5
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.6e-93 347.4 250 67.2
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 2.3e-92 343.6 280 63.6
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 4.2e-78 296.2 288 53.1
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 7.1e-62 242.3 194 62.4
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 2.7e-61 240.4 176 67.6
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 8.2e-58 228.8 291 46.0
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.0e-47 195.3 305 40.3
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 2.1e-45 187.6 152 63.8
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 4.6e-45 186.4 144 66.7
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 1.7e-42 177.9 153 59.5
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 3.1e-41 173.7 129 67.4
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 4.1e-41 173.3 331 35.6
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 5.3e-41 172.9 200 47.5
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 4.7e-37 159.8 147 55.8
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 1.8e-33 147.9 126 61.1
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 4.1e-33 146.7 92 72.8
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 3.5e-32 143.7 114 60.5
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 1.0e-31 142.1 93 69.9
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 4.7e-29 133.3 100 61.0
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 1.3e-26 125.2 375 29.1
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.4e-25 121.7 97 64.9
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 2.3e-12 77.8 202 27.2
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 5.7e-11 73.2 49 63.3
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 7.5e-11 72.8 63 52.4
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 9.8e-11 72.4 59 61.0
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 4.3e-06 57.0 70 41.4


User provided reference genes

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