Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1930.2 988 100.0
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1535.4 973 77.7
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1534.2 988 75.4
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1506.1 954 76.1
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1494.6 988 74.5
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1488.4 989 73.3
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1468.4 973 73.5
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1463.4 989 72.5
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1457.2 988 72.6
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1457.2 973 72.5
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1452.6 963 72.9
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1449.9 988 72.0
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1449.5 988 71.7
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1447.2 971 72.0
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1442.9 965 72.6
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1442.6 986 70.6
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1441.8 986 71.3
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1436.4 971 71.6
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1435.6 973 71.0
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1435.2 973 71.0
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1434.9 973 71.0
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1434.9 988 70.7
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1434.5 988 69.9
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1434.1 984 70.9
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1432.5 993 70.8
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1432.2 988 70.9
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1428.7 973 70.9
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1428.7 968 71.3
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1427.9 986 70.8
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1427.5 972 71.9
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1426.0 972 71.3
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1424.8 973 70.6
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1421.8 988 69.7
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1421.8 974 71.5
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1421.4 986 70.2
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1420.2 973 70.7
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1419.8 986 70.0
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1419.4 988 69.9
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1417.9 988 70.1
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1417.9 966 70.4
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1417.9 988 69.9
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1417.5 973 70.2
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1417.1 974 70.5
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1417.1 988 70.2
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1416.0 971 70.5
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1414.1 986 69.9
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1413.7 973 70.2
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1413.7 971 70.5
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1413.3 986 69.8
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1412.9 988 70.1
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1410.2 988 69.0
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1409.8 989 70.1
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1409.4 1011 68.3
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1408.7 989 70.0
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1407.5 989 70.2
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1407.5 989 70.1
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1407.1 995 70.5
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1405.6 973 69.7
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1403.7 1084 66.0
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1402.9 1083 65.9
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1402.5 987 69.9
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1402.1 989 69.9
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1401.7 973 70.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1401.7 987 69.3
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1401.3 973 69.8
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1400.6 973 70.1
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1399.4 973 70.6
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1394.4 988 69.4
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1392.5 973 69.8
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1389.0 973 69.2
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1385.2 992 68.5
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1383.6 989 67.7
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1383.6 988 68.2
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1383.2 955 71.0
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1381.7 989 67.6
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1379.4 987 68.8
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1373.6 991 67.5
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1373.6 988 68.1
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1373.2 988 67.9
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1370.9 996 68.5
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1369.0 953 70.6
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1365.1 993 68.5
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1364.7 988 67.4
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1361.3 995 68.2
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1358.6 988 67.1
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1358.2 988 68.2
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1356.3 973 67.6
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1355.9 973 67.9
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1352.8 987 67.1
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1352.4 987 67.0
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1350.9 988 67.3
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1348.6 995 68.1
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1344.3 973 67.4
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1343.2 973 67.5
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1341.3 988 66.6
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1340.9 989 66.6
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1340.5 988 66.3
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1338.9 989 66.6
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1335.5 988 64.8
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1329.3 1008 65.3
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1325.8 988 64.1
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1325.1 988 63.8
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1323.9 994 63.6
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1323.5 1015 65.0
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1316.2 968 67.5
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1312.4 988 63.6
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1303.1 900 70.2
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1286.2 988 64.5
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1285.4 1001 63.6
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1284.2 988 64.3
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1276.9 980 63.3
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1268.8 882 69.6
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1256.9 964 64.2
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1243.0 977 61.6
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1239.9 988 62.0
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1238.4 973 63.9
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1230.7 986 62.2
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1221.5 973 60.5
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1204.1 973 60.0
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1201.0 847 69.2
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1198.0 1017 59.9
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1169.1 881 65.9
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1121.3 848 63.7
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1086.2 953 58.2
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 2.0e-306 1055.8 809 62.5
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.8e-286 989.6 982 51.4
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 3.9e-286 988.4 977 52.0
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.4e-261 905.2 541 79.7
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 4.9e-260 901.7 659 66.8
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 7.5e-245 851.3 953 48.5
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 4.6e-242 842.0 658 62.9
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.7e-241 840.1 693 58.6
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 3.3e-208 729.6 868 43.7
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.6e-207 726.1 530 67.5
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.6e-189 666.8 798 47.9
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.8e-175 619.4 362 81.8
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 1.8e-161 574.3 904 39.3
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 5.9e-157 559.3 409 67.5
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 1.2e-144 518.5 295 87.1
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 1.8e-142 511.1 295 84.7
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.4e-134 484.2 282 83.3
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-129 468.0 842 34.9
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 4.7e-114 416.8 1038 31.3
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 3.5e-109 400.6 664 41.0
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.7e-108 398.3 303 63.7
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 6.6e-108 396.4 1002 30.7
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 5.6e-107 393.3 256 73.0
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 1.3e-87 328.9 371 47.7
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.1e-86 325.9 318 52.5
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 2.9e-79 301.2 433 40.4
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.5e-75 288.9 257 56.4
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 9.7e-75 286.2 363 44.4
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.2e-63 248.4 251 52.6
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 5.3e-57 227.3 147 80.3
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 2.2e-55 221.9 129 84.5
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 2.9e-55 221.5 185 59.5
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 8.5e-55 219.9 140 72.9
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 2.5e-54 218.4 125 86.4
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.4e-49 201.8 125 82.4
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 2.5e-46 191.8 105 84.8
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 6.1e-45 187.2 200 57.0
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 5.2e-44 184.1 1027 23.1
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 1.0e-36 159.8 101 72.3
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 2.3e-36 158.7 101 72.3
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 2.3e-36 158.7 101 72.3
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 2.7e-32 145.2 85 87.1
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.4e-25 122.9 82 68.3
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 8.0e-21 107.1 121 54.5
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 8.0e-21 107.1 121 54.5
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 5.2e-20 104.4 182 36.3
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 3.4e-19 101.7 82 58.5
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 7.5e-19 100.5 59 79.7
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 2.2e-18 99.0 62 71.0
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.8e-17 95.9 60 75.0
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 1.8e-17 95.9 63 76.2
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 3.2e-17 95.1 53 79.2
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 4.6e-16 91.3 55 78.2
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.0e-15 90.1 60 71.7
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 3.9e-15 88.2 60 70.0
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.9e-14 85.9 136 39.7
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 1.9e-14 85.9 166 34.9
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 3.6e-13 81.6 47 74.5
Psat6g121640 Pisum sativum HOM05D000840 ORTHO05D000670 9.2e-09 67.0 69 44.9
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 2.1e-08 65.9 115 35.7
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 7.8e-08 63.9 122 35.2


User provided reference genes

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