Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g04790 Coffea canephora HOM05D007539 ORTHO05D009315 2.1e-132 475.7 242 100.0
Sc20g0005850 Simmondsia chinensis HOM05D007539 ORTHO05D009315 1.2e-87 327.0 214 75.7
Dinv37358 Davidia involucrata HOM05D007539 ORTHO05D009315 1.1e-83 313.9 239 68.2
Manes.08G015800 Manihot esculenta HOM05D007539 ORTHO05D009315 3.8e-81 305.4 227 68.3
Sopen10g035220 Solanum pennellii HOM05D007539 ORTHO05D009315 4.9e-81 305.1 239 66.9
PGR142G1614 Punica granatum HOM05D007539 ORTHO05D009315 6.4e-81 304.7 170 81.8
Lj2A124T70 Lonicera japonica HOM05D007539 ORTHO05D009315 1.9e-80 303.1 220 68.2
PGSC0003DMG400008599 Solanum tuberosum HOM05D007539 ORTHO05D009315 1.9e-80 303.1 240 66.2
TWI74G0011 Tripterygium wilfordii HOM05D007539 ORTHO05D009315 2.4e-80 302.8 220 69.5
Solyc10g085820.2 Solanum lycopersicum HOM05D007539 ORTHO05D009315 9.3e-80 300.8 239 66.1
Oeu045245.1 Olea europaea HOM05D007539 ORTHO05D009315 3.5e-79 298.9 222 68.0
Thecc.05G075600 Theobroma cacao HOM05D007539 ORTHO05D009315 3.5e-79 298.9 168 82.7
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 4.6e-79 298.5 175 79.4
Nitab4.5_0009839g0010 Nicotiana tabacum HOM05D007539 ORTHO05D009315 6.0e-79 298.1 232 66.8
Nn2g13907 Nelumbo nucifera HOM05D007539 ORTHO05D009315 1.3e-78 297.0 170 82.9
Ca_11568_v3 Cicer arietinum L. HOM05D007539 ORTHO05D009315 5.1e-78 295.0 184 77.2
Prupe.7G122900 Prunus persica HOM05D007539 ORTHO05D009315 8.7e-78 294.3 237 66.2
Aqoxy4G02594 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 1.5e-77 293.5 188 76.6
Migut.L01732 Erythranthe guttata HOM05D007539 ORTHO05D009315 1.5e-77 293.5 235 66.4
Gohir.A04G068300 Gossypium hirsutum HOM05D007539 ORTHO05D009315 2.5e-77 292.7 169 81.1
Gorai.009G410900 Gossypium raimondii HOM05D007539 ORTHO05D009315 2.5e-77 292.7 169 80.5
CAN.G729.5 Capsicum annuum HOM05D007539 ORTHO05D009315 3.3e-77 292.4 167 80.2
COL.COLO4_22255 Corchorus olitorius HOM05D007539 ORTHO05D009315 3.3e-77 292.4 247 64.0
Eucgr.K02419 Eucalyptus grandis HOM05D007539 ORTHO05D009315 3.3e-77 292.4 175 76.6
Lj5g0010413 Lotus japonicus HOM05D007539 ORTHO05D009315 3.3e-77 292.4 175 78.9
Aqoxy2G01556 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 4.3e-77 292.0 168 81.0
Peaxi162Scf00146g00014 Petunia axillaris HOM05D007539 ORTHO05D009315 4.3e-77 292.0 210 68.1
Cpa.g.sc5.125 Carica papaya HOM05D007539 ORTHO05D009315 7.3e-77 291.2 232 65.9
SalBow5G4705 Salvia bowleyana HOM05D007539 ORTHO05D009315 7.3e-77 291.2 210 68.6
Psat6g077160 Pisum sativum HOM05D007539 ORTHO05D009315 9.6e-77 290.8 207 72.5
MELO3C009408.2 Cucumis melo HOM05D007539 ORTHO05D009315 1.3e-76 290.4 174 77.0
RcHm_v2.0_Chr3g0471301 Rosa chinensis HOM05D007539 ORTHO05D009315 1.3e-76 290.4 211 71.1
Eucgr.K02422 Eucalyptus grandis HOM05D007539 ORTHO05D009315 1.6e-76 290.0 173 76.3
Sed0004549 Sechium edule HOM05D007539 ORTHO05D009315 1.6e-76 290.0 186 75.8
Gohir.D04G106800 Gossypium hirsutum HOM05D007539 ORTHO05D009315 2.8e-76 289.3 169 80.5
Duzib093G0735 Durio zibethinus HOM05D007539 ORTHO05D009315 4.8e-76 288.5 242 64.0
arahy.Tifrunner.gnm1.ann1.6XWD2H Arachis hypogaea HOM05D007539 ORTHO05D009315 8.1e-76 287.7 174 79.3
arahy.Tifrunner.gnm1.ann1.M3KAW1 Arachis hypogaea HOM05D007539 ORTHO05D009315 8.1e-76 287.7 174 79.3
Ciclev10009520m.g Citrus clementina HOM05D007539 ORTHO05D009315 8.1e-76 287.7 195 72.3
TPR.G9909 Trifolium pratense HOM05D007539 ORTHO05D009315 1.1e-75 287.3 189 73.5
MSTRG.10338 Avicennia marina HOM05D007539 ORTHO05D009315 1.4e-75 287.0 227 65.6
VMungo0720G2140 Vigna mungo HOM05D007539 ORTHO05D009315 1.8e-75 286.6 193 72.5
Potri.016G096900 Populus trichocarpa HOM05D007539 ORTHO05D009315 3.1e-75 285.8 187 75.4
MD12G1102800 Malus domestica HOM05D007539 ORTHO05D009315 5.3e-75 285.0 244 64.3
QL07p041368 Quercus lobata HOM05D007539 ORTHO05D009315 5.3e-75 285.0 172 76.7
Glyma.10G063500 Glycine max HOM05D007539 ORTHO05D009315 9.0e-75 284.3 168 79.2
Ah.08g211220 Amaranthus hybridus HOM05D007539 ORTHO05D009315 1.2e-74 283.9 224 64.3
EL10Ac7g16719 Beta vulgaris HOM05D007539 ORTHO05D009315 1.2e-74 283.9 179 74.3
Medtr1g062250 Medicago truncatula HOM05D007539 ORTHO05D009315 2.0e-74 283.1 196 71.9
SGA_v2.0_scaffold224G42914 Striga asiatica HOM05D007539 ORTHO05D009315 2.0e-74 283.1 185 74.6
FAN05G2086 Fragaria x ananassa HOM05D007539 ORTHO05D009315 3.4e-74 282.3 240 62.9
Actinidia39861 Actinidia chinensis HOM05D007539 ORTHO05D009315 7.6e-74 281.2 180 73.9
MBI11_g41953_MAGBIO Magnolia biondii HOM05D007539 ORTHO05D009315 7.6e-74 281.2 220 65.5
Rhsim03G0085100 Rhododendron simsii HOM05D007539 ORTHO05D009315 7.6e-74 281.2 264 57.6
FvH4_6g17220 Fragaria vesca HOM05D007539 ORTHO05D009315 2.9e-73 279.3 240 62.1
Phvul.007G226000 Phaseolus vulgaris HOM05D007539 ORTHO05D009315 3.8e-73 278.9 195 70.8
HanXRQChr08g0218701 Helianthus annuus HOM05D007539 ORTHO05D009315 8.4e-73 277.7 191 70.7
GSVIVG01033714001 Vitis vinifera HOM05D007539 ORTHO05D009315 1.1e-72 277.3 180 72.8
unitig_8.g4721 Utricularia gibba HOM05D007539 ORTHO05D009315 2.4e-72 276.2 187 71.1
AUR62042699 Chenopodium quinoa HOM05D007539 ORTHO05D009315 4.2e-72 275.4 193 68.9
FAN14G0473 Fragaria x ananassa HOM05D007539 ORTHO05D009315 7.1e-72 274.6 234 62.0
BcaB01g05802 Brassica carinata HOM05D007539 ORTHO05D009315 1.2e-71 273.9 218 63.8
CANSAT80G1421 Cannabis sativa HOM05D007539 ORTHO05D009315 1.6e-71 273.5 180 76.1
FAN05G5748 Fragaria x ananassa HOM05D007539 ORTHO05D009315 6.0e-71 271.6 240 61.7
Zm00001eb175880 Zea mays HOM05D007539 ORTHO05D009315 6.0e-71 271.6 171 71.9
Thhalv10014552m.g Eutrema salsugineum HOM05D007539 ORTHO05D009315 7.9e-71 271.2 174 73.0
FAN02G2576 Fragaria x ananassa HOM05D007539 ORTHO05D009315 1.8e-70 270.0 220 63.6
CsaV3_3G036460 Cucumis sativus L. HOM05D007539 ORTHO05D009315 1.1e-69 267.3 185 70.3
CARHR209760 Cardamine hirsuta HOM05D007539 ORTHO05D009315 2.5e-69 266.2 249 58.2
Sabra16G0100100 Salix brachista HOM05D007539 ORTHO05D009315 2.5e-69 266.2 228 61.4
CDE02G3922 Ceratophyllum demersum HOM05D007539 ORTHO05D009315 1.3e-68 263.8 187 69.0
Os08g0560600 Oryza sativa ssp. japonica HOM05D007539 ORTHO05D009315 3.7e-68 262.3 200 64.5
HPP92_014788 Vanilla planifolia HOM05D007539 ORTHO05D009315 8.1e-68 261.2 166 71.7
A03p01240 Brassica napus HOM05D007539 ORTHO05D009315 1.1e-67 260.8 182 69.2
PSO339G1895 Papaver somniferum HOM05D007539 ORTHO05D009315 1.8e-67 260.0 180 69.4
ECA238G4618 Erigeron canadensis HOM05D007539 ORTHO05D009315 3.1e-67 259.2 166 74.7
ATR0950G005 Amborella trichopoda HOM05D007539 ORTHO05D009315 1.0e-65 254.2 216 59.3
Nitab4.5_0000725g0080 Nicotiana tabacum HOM05D007539 ORTHO05D009315 8.4e-65 251.1 260 53.8
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.9e-64 250.0 211 64.0
Lalb_Chr02g0155351 Lupinus albus HOM05D007539 ORTHO05D009315 1.8e-62 243.4 147 76.9
Glyma.13G148000 Glycine max HOM05D007539 ORTHO05D009315 3.9e-62 242.3 141 79.4
CiPaw.09G005200 Carya illinoinensis HOM05D007539 ORTHO05D009315 6.7e-62 241.5 180 67.8
vmacro07349 Vaccinium macrocarpon HOM05D007539 ORTHO05D009315 1.6e-60 236.9 139 77.7
Ah.12g063350 Amaranthus hybridus HOM05D007539 ORTHO05D009315 8.2e-60 234.6 139 75.5
ClCG10G019640 Citrullus lanatus HOM05D007539 ORTHO05D009315 2.4e-59 233.0 216 57.9
BolC3t12712H Brassica oleracea HOM05D007539 ORTHO05D009315 1.5e-58 230.3 291 45.4
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 2.9e-57 226.1 147 70.7
C03p01600 Brassica napus HOM05D007539 ORTHO05D009315 1.0e-54 217.6 189 59.8
BcaB01g05814 Brassica carinata HOM05D007539 ORTHO05D009315 3.0e-54 216.1 155 67.1
Lsat_1_v5_gn_2_18420 Lactuca sativa HOM05D007539 ORTHO05D009315 2.5e-48 196.4 122 73.0
Carub.0006s0239 Capsella rubella HOM05D007539 ORTHO05D009315 1.6e-47 193.7 122 71.3
AUR62040192 Chenopodium quinoa HOM05D007539 ORTHO05D009315 2.1e-47 193.4 123 70.7
AL6G13050 Arabidopsis lyrata HOM05D007539 ORTHO05D009315 3.6e-47 192.6 122 70.5
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 2.6e-42 176.4 217 45.2
AagrBONN_evm.TU.Sc2ySwM_117.3355 Anthoceros agrestis HOM05D007539 ORTHO05D009315 3.6e-39 166.0 183 43.7
Mapoly0014s0214 Marchantia polymorpha HOM05D007539 ORTHO05D009315 1.8e-38 163.7 239 41.8
FAN09G1910 Fragaria x ananassa HOM05D007539 ORTHO05D009315 1.1e-32 144.4 77 88.3
QL07p041388 Quercus lobata HOM05D007539 ORTHO05D009315 1.7e-28 130.6 74 75.7
CBR_g37238 Chara braunii HOM05D007539 ORTHO05D009315 3.4e-21 106.3 218 29.8
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.3e-14 83.6 119 49.6
CSS0032451 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 2.5e-08 63.5 91 47.3
CSS0027054 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 3.3e-08 63.2 73 56.2
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 3.6e-07 59.7 94 53.2
CSS0044668 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 4.7e-07 59.3 74 52.7


User provided reference genes

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