Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 8.3e-263 909.8 458 100.0
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.4e-185 653.3 490 66.9
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 3.6e-181 638.6 487 65.7
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 6.1e-181 637.9 497 65.6
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 3.0e-180 635.6 506 64.6
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 3.9e-180 635.2 494 65.2
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 5.1e-180 634.8 492 64.4
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 6.7e-180 634.4 487 66.1
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 2.5e-179 632.5 489 65.2
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 2.8e-178 629.0 487 64.7
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 4.8e-178 628.2 491 64.6
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.8e-177 626.3 502 63.1
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 2.4e-177 625.9 502 64.3
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 3.1e-177 625.5 491 64.2
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 3.1e-177 625.5 487 65.1
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 9.1e-177 624.0 500 64.0
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.2e-176 623.6 500 63.8
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.5e-176 623.2 500 63.8
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 1.0e-175 620.5 440 70.7
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.3e-175 620.2 500 63.8
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 2.2e-175 619.4 502 62.4
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 2.9e-175 619.0 489 62.8
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 2.9e-175 619.0 500 63.2
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 5.0e-175 618.2 499 62.3
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 8.5e-175 617.5 487 63.7
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 8.5e-175 617.5 497 63.6
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.4e-174 616.7 490 63.5
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.9e-174 616.3 488 63.3
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 3.2e-174 615.5 504 61.7
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.2e-173 613.6 490 64.3
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.2e-173 613.6 504 62.7
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 3.6e-173 612.1 481 63.2
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 3.6e-173 612.1 492 63.8
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 3.6e-173 612.1 501 63.1
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 6.1e-173 611.3 491 61.5
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 3.0e-172 609.0 480 64.6
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 5.1e-172 608.2 490 63.9
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 6.7e-172 607.8 495 62.2
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 8.8e-172 607.4 505 63.2
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 2.0e-171 606.3 439 67.9
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 2.6e-171 605.9 491 61.5
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 3.3e-171 605.5 506 61.1
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 5.7e-171 604.7 488 62.3
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 7.4e-171 604.4 474 63.5
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 1.7e-170 603.2 479 63.3
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 2.2e-170 602.8 486 62.8
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 3.7e-170 602.1 478 63.4
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 4.8e-170 601.7 488 62.3
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 4.8e-170 601.7 503 60.4
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 8.2e-170 600.9 490 63.3
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 8.2e-170 600.9 491 61.3
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.4e-169 600.1 498 60.8
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 1.4e-169 600.1 485 63.3
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 1.8e-169 599.7 484 62.6
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 9.1e-169 597.4 478 62.8
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 1.2e-168 597.0 487 61.4
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.6e-168 595.9 498 60.8
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 2.6e-168 595.9 481 62.4
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.6e-168 595.9 471 63.7
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.6e-168 595.9 471 63.7
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 5.9e-168 594.7 488 60.7
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 7.7e-168 594.3 497 60.2
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 1.0e-167 594.0 490 61.2
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 1.7e-167 593.2 470 63.6
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 2.9e-167 592.4 496 61.9
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 5.0e-167 591.7 476 62.4
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 5.0e-167 591.7 488 61.1
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 1.4e-166 590.1 490 61.2
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 1.9e-166 589.7 490 61.0
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 4.2e-166 588.6 494 61.1
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 4.2e-166 588.6 506 59.9
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 4.2e-166 588.6 469 62.7
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.2e-165 587.0 498 60.4
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 1.2e-165 587.0 494 60.9
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 1.6e-165 586.6 479 61.6
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 2.7e-165 585.9 480 61.7
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 6.1e-165 584.7 494 60.5
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 6.1e-165 584.7 476 62.4
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 6.1e-165 584.7 473 62.8
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 1.4e-164 583.6 491 60.5
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 2.3e-164 582.8 502 60.4
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 3.0e-164 582.4 487 61.6
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 3.0e-164 582.4 487 61.6
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 8.8e-164 580.9 479 61.0
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 8.8e-164 580.9 488 60.0
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.1e-163 580.5 449 66.6
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.6e-163 579.3 482 60.6
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 3.3e-163 578.9 469 62.0
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 8.2e-162 574.3 438 66.0
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 1.8e-161 573.2 480 60.8
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 1.2e-160 570.5 488 59.6
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 5.9e-160 568.2 491 57.8
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.3e-159 567.0 497 58.8
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.8e-159 565.5 471 59.9
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 3.8e-159 565.5 471 59.9
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.6e-157 558.9 471 59.7
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 1.4e-156 557.0 474 60.5
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 5.2e-156 555.1 471 59.9
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 8.8e-156 554.3 451 63.4
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.4e-153 547.0 440 63.2
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 3.8e-151 538.9 468 60.5
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.5e-151 538.1 481 57.0
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.5e-151 538.1 480 57.1
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.9e-150 536.6 480 56.9
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 9.4e-150 534.3 500 53.2
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 4.8e-146 521.9 411 63.3
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.8e-140 503.4 437 60.9
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 1.5e-139 500.4 463 54.0
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 8.3e-138 494.6 496 50.0
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.0e-135 487.6 478 55.2
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 1.3e-135 487.3 486 50.2
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 2.9e-135 486.1 394 62.4
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 1.5e-134 483.8 487 52.2
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 1.2e-133 480.7 476 48.9
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 4.0e-132 475.7 474 50.6
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.0e-131 473.4 474 50.8
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 7.0e-129 464.9 392 62.2
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 1.3e-114 417.5 491 42.8
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 3.6e-101 372.9 509 40.3
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.0e-99 367.1 345 56.8
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 3.4e-99 366.3 495 40.2
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 1.3e-98 364.4 260 70.0
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 4.6e-96 355.9 329 58.7
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 1.0e-50 205.3 141 68.1
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 2.1e-48 197.6 502 27.9
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 5.7e-46 189.5 143 65.0
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 8.0e-32 142.5 117 61.5
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 5.9e-27 126.3 450 24.9
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 1.6e-24 118.2 71 74.6
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 6.1e-24 116.3 81 77.8
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 7.0e-12 76.3 404 24.5
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 5.0e-10 70.1 59 59.3
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 5.0e-10 70.1 403 24.8


User provided reference genes

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