Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 0.0e+00 1162.9 586 100.0
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 1.3e-241 839.7 582 73.7
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.8e-241 839.3 585 71.8
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 6.7e-241 837.4 585 72.8
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 7.4e-240 833.9 585 73.5
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.1e-238 830.1 587 71.6
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 3.1e-238 828.6 498 82.7
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 6.9e-238 827.4 583 73.2
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 2.0e-237 825.9 505 79.8
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 2.6e-237 825.5 582 71.3
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.6e-237 825.5 564 73.9
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 3.4e-237 825.1 528 78.4
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 3.4e-237 825.1 564 73.9
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 5.8e-237 824.3 583 70.7
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 1.0e-236 823.5 585 72.8
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 1.4e-235 819.7 506 79.1
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 2.5e-235 818.9 507 79.5
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 2.5e-235 818.9 506 80.4
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 3.2e-235 818.5 494 82.0
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 5.5e-235 817.8 506 79.6
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 7.1e-235 817.4 587 72.2
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 2.7e-234 815.5 495 81.2
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 6.0e-234 814.3 587 70.5
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.3e-233 813.1 506 78.9
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 3.0e-233 812.0 488 80.7
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 3.9e-233 811.6 512 78.5
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 2.5e-232 808.9 567 72.8
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 9.6e-232 807.0 508 78.7
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 2.1e-231 805.8 498 78.5
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 2.1e-231 805.8 595 69.7
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 3.7e-231 805.1 545 75.8
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 4.8e-231 804.7 557 73.1
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 2.6e-229 798.9 594 68.9
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 1.0e-228 797.0 561 72.7
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 1.0e-228 797.0 489 78.7
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.7e-228 796.2 582 71.0
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 2.2e-228 795.8 496 79.8
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 2.9e-228 795.4 589 69.8
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 5.0e-228 794.7 580 70.7
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.9e-227 792.7 580 69.8
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 3.2e-227 792.0 542 73.4
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 2.1e-226 789.3 502 79.3
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 3.6e-226 788.5 501 78.0
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 6.1e-226 787.7 550 72.5
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 1.0e-225 786.9 495 78.4
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 1.8e-225 786.2 487 78.4
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 1.1e-224 783.5 492 77.8
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 1.5e-224 783.1 486 79.4
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 2.5e-224 782.3 549 72.3
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 7.4e-224 780.8 489 78.3
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 9.7e-224 780.4 509 76.4
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 2.2e-223 779.2 588 68.7
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.8e-223 778.9 505 75.6
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 3.7e-223 778.5 505 75.6
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 9.0e-222 773.9 580 69.5
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 1.2e-221 773.5 528 74.4
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 3.4e-221 771.9 557 71.3
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 7.7e-221 770.8 481 79.0
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 5.0e-220 768.1 486 78.0
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 2.5e-219 765.8 579 67.7
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 5.5e-219 764.6 476 78.4
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.8e-217 759.6 586 66.7
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 3.9e-217 758.4 464 80.4
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 6.7e-217 757.7 533 71.3
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 1.5e-216 756.5 578 68.2
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 1.5e-216 756.5 578 68.2
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 1.5e-216 756.5 463 79.3
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 2.0e-216 756.1 594 66.5
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 7.4e-216 754.2 587 67.8
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.3e-215 753.4 522 73.6
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 1.3e-215 753.4 518 74.1
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.7e-215 753.1 451 82.7
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.7e-215 751.9 487 76.0
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 3.7e-215 751.9 581 68.2
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 3.7e-215 751.9 578 68.2
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 4.8e-215 751.5 512 73.6
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 2.4e-214 749.2 518 73.7
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.2e-213 746.9 567 67.7
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 2.0e-213 746.1 567 67.5
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 3.4e-213 745.3 512 72.9
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 3.4e-213 745.3 588 67.7
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 3.4e-213 745.3 546 69.4
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 3.4e-213 745.3 478 75.1
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 5.9e-213 744.6 507 73.6
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 7.7e-213 744.2 590 66.8
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 1.0e-212 743.8 517 72.9
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 1.3e-212 743.4 480 77.5
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 2.9e-212 742.3 512 72.7
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.6e-210 736.5 491 77.2
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.1e-210 736.1 567 67.4
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.5e-208 729.9 508 73.6
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 3.3e-208 728.8 489 75.1
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.3e-207 726.9 442 80.3
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 6.3e-207 724.5 479 73.3
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 2.2e-204 716.1 581 64.0
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 3.3e-200 702.2 566 65.4
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 3.1e-198 695.7 503 67.0
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 3.8e-196 688.7 489 69.3
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 3.6e-194 682.2 481 72.1
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 6.1e-194 681.4 580 64.0
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 3.0e-193 679.1 410 80.2
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.2e-192 677.2 487 67.1
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.7e-191 672.2 487 66.9
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.3e-191 671.4 487 66.9
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 2.9e-188 662.5 480 65.2
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 3.6e-186 655.6 586 60.1
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 8.0e-186 654.4 490 66.9
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 3.0e-185 652.5 447 73.8
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 4.5e-181 638.6 533 59.1
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 1.5e-179 633.6 487 63.4
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 4.3e-179 632.1 461 67.7
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 2.0e-168 596.7 393 75.8
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 1.2e-162 577.4 475 56.6
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 3.1e-161 572.8 479 59.5
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.6e-160 569.7 471 58.2
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 4.1e-158 562.4 474 56.5
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.9e-155 553.5 448 65.4
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 5.8e-144 515.4 474 51.7
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 4.9e-143 512.3 372 70.4
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 9.3e-142 508.1 320 79.4
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 2.4e-134 483.4 333 72.7
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 5.5e-126 455.7 520 47.1
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 5.1e-124 449.1 490 47.3
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 2.0e-72 277.7 163 80.4
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 4.3e-62 243.4 481 32.8
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 6.0e-56 223.0 141 78.7
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 1.9e-41 174.9 115 73.9
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 1.4e-36 158.7 426 25.8
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 9.6e-30 136.0 71 87.3
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.9e-26 124.4 80 83.8
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 1.2e-16 92.4 424 23.8
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 6.0e-16 90.1 64 70.3
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 2.3e-15 88.2 423 26.2
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 2.5e-06 58.2 28 92.9


User provided reference genes

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