Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 2.4e-76 289.3 208 100.0
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 2.9e-45 186.0 205 69.3
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 1.9e-44 183.3 205 68.3
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 2.4e-44 183.0 205 71.7
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 1.0e-42 177.6 204 77.0
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 1.3e-42 177.2 204 74.5
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 2.3e-42 176.4 208 71.6
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.3e-42 176.4 207 61.8
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.0e-42 176.0 208 70.2
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 5.1e-42 175.3 206 72.8
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 6.6e-42 174.9 205 71.2
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 1.5e-41 173.7 206 71.4
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 2.5e-41 172.9 203 71.4
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 5.6e-41 171.8 206 70.4
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 7.3e-41 171.4 206 70.9
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 1.2e-40 170.6 200 71.5
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.6e-40 170.2 205 68.8
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 1.6e-40 170.2 206 70.9
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 1.6e-40 170.2 208 71.6
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.1e-40 169.9 215 65.6
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.1e-40 169.9 215 65.6
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 3.6e-40 169.1 205 70.2
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 3.6e-40 169.1 205 66.3
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 3.6e-40 169.1 205 70.2
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 6.2e-40 168.3 209 70.3
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 6.2e-40 168.3 203 71.4
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 1.4e-39 167.2 203 71.4
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 1.4e-39 167.2 210 68.1
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 1.4e-39 167.2 207 70.5
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 1.8e-39 166.8 200 71.5
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 3.1e-39 166.0 206 65.0
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 6.8e-39 164.9 206 71.8
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 6.8e-39 164.9 205 67.3
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 6.8e-39 164.9 208 67.3
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 6.8e-39 164.9 204 69.1
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 1.2e-38 164.1 197 72.6
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.5e-38 163.7 208 66.3
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 2.0e-38 163.3 205 65.9
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 2.6e-38 162.9 205 67.8
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 4.4e-38 162.2 205 69.3
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 5.8e-38 161.8 206 70.4
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 7.5e-38 161.4 206 70.4
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 9.9e-38 161.0 208 68.3
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 9.9e-38 161.0 233 63.5
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 9.9e-38 161.0 201 68.2
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 1.3e-37 160.6 207 68.6
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 2.2e-37 159.8 206 62.1
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 2.2e-37 159.8 207 71.0
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 4.9e-37 158.7 205 67.8
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 6.4e-37 158.3 218 66.1
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.1e-36 157.5 204 68.6
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.4e-36 156.4 199 70.4
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.4e-36 156.4 199 70.4
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 2.4e-36 156.4 199 70.9
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 2.4e-36 156.4 206 67.0
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 2.4e-36 156.4 204 68.6
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 2.4e-36 156.4 206 68.4
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 3.2e-36 156.0 203 65.5
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 4.1e-36 155.6 202 66.8
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 5.4e-36 155.2 205 67.8
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 5.4e-36 155.2 205 67.8
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 5.4e-36 155.2 206 64.6
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 7.1e-36 154.8 205 67.8
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 9.2e-36 154.5 204 58.8
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 9.2e-36 154.5 199 65.3
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.2e-35 154.1 205 67.3
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.2e-35 154.1 195 73.3
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 1.2e-35 154.1 197 73.1
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.6e-35 153.7 199 68.3
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 3.5e-35 152.5 223 64.1
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 7.8e-35 151.4 202 64.9
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.0e-34 151.0 207 68.1
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.7e-34 150.2 207 65.7
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-34 150.2 207 67.6
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 1.7e-34 150.2 206 60.7
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 2.3e-34 149.8 207 65.2
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 2.3e-34 149.8 200 54.0
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.3e-34 149.8 204 67.6
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 3.0e-34 149.4 204 68.6
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 3.9e-34 149.1 143 74.8
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 3.9e-34 149.1 209 66.0
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 3.9e-34 149.1 263 47.1
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 1.1e-33 147.5 198 63.1
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.1e-33 147.5 196 73.5
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 1.1e-33 147.5 202 54.5
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-33 147.1 207 66.2
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 1.5e-33 147.1 198 67.7
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.9e-33 146.7 204 68.1
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 1.9e-33 146.7 143 72.7
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.9e-33 146.7 196 67.9
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.9e-33 146.7 208 56.2
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 4.3e-33 145.6 204 66.7
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 4.3e-33 145.6 205 66.3
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 1.2e-32 144.1 203 60.6
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 2.1e-32 143.3 206 65.5
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 2.1e-32 143.3 202 66.8
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 2.8e-32 142.9 202 65.8
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 2.4e-31 139.8 200 59.5
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 3.1e-31 139.4 142 72.5
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 4.0e-31 139.0 201 62.2
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 4.0e-31 139.0 143 67.8
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-30 137.1 203 59.6
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 2.6e-30 136.3 202 41.1
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 3.4e-30 136.0 205 42.0
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 3.4e-30 136.0 205 42.0
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 4.4e-30 135.6 202 50.5
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 9.9e-30 134.4 202 40.6
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-28 130.6 190 40.5
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 1.7e-26 123.6 164 72.0
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 6.6e-26 121.7 145 59.3
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 3.3e-25 119.4 201 60.7
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.3e-25 118.2 211 50.7
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.2e-24 117.5 206 49.5
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 2.4e-23 113.2 138 79.7
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 4.0e-23 112.5 199 60.3
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 5.8e-22 108.6 139 79.1
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 9.9e-22 107.8 157 66.2
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 9.9e-22 107.8 157 66.2
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 9.9e-22 107.8 157 66.2
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 9.9e-22 107.8 157 66.2
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 4.9e-21 105.5 193 42.5
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 4.9e-21 105.5 193 42.5
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 4.9e-21 105.5 193 35.8
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 6.4e-21 105.1 161 65.8
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 6.4e-21 105.1 161 65.8
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 1.9e-20 103.6 226 43.4
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 3.2e-20 102.8 193 42.0
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 4.2e-20 102.4 193 42.0
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 2.1e-19 100.1 199 54.8
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 5.1e-18 95.5 215 43.3
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 1.1e-17 94.4 138 51.4
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 1.9e-17 93.6 69 63.8
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 6.2e-16 88.6 154 67.5
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-15 87.8 145 71.0
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 3.1e-15 86.3 167 56.9
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.3e-15 85.5 146 54.8
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 2.6e-14 83.2 79 84.8
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 5.8e-14 82.0 105 46.7
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 9.9e-14 81.3 145 46.9
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 8.7e-10 68.2 78 46.2
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 8.7e-10 68.2 98 40.8
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.9e-09 67.0 118 58.5
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 1.8e-07 60.5 167 29.9
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 9.0e-07 58.2 58 48.3
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 1.2e-06 57.8 60 55.0
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 5.8e-06 55.5 99 39.4


User provided reference genes

Program Settings