Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g04460 Coffea canephora HOM05D006897 ORTHO05D008825 2.1e-67 258.8 127 100.0
Dinv35807 Davidia involucrata HOM05D006897 ORTHO05D008825 3.5e-54 214.9 126 82.5
Sopen10g033350 Solanum pennellii HOM05D006897 ORTHO05D008825 7.8e-54 213.8 123 83.7
PGSC0003DMG400028283 Solanum tuberosum HOM05D006897 ORTHO05D008825 1.0e-53 213.4 123 83.7
Manes.08G012300 Manihot esculenta HOM05D006897 ORTHO05D008825 1.3e-53 213.0 127 80.3
CSS0029455 Camellia sinensis var. sinensis HOM05D006897 ORTHO05D008825 5.1e-53 211.1 133 77.4
Migut.J00586 Erythranthe guttata HOM05D006897 ORTHO05D008825 1.5e-52 209.5 125 76.8
Lsat_1_v5_gn_6_28260 Lactuca sativa HOM05D006897 ORTHO05D008825 4.3e-52 208.0 125 77.6
MSTRG.5772 Avicennia marina HOM05D006897 ORTHO05D008825 2.1e-51 205.7 127 75.6
GSVIVG01033669001 Vitis vinifera HOM05D006897 ORTHO05D008825 2.1e-51 205.7 128 78.9
Ca_08918_v3 Cicer arietinum L. HOM05D006897 ORTHO05D008825 4.7e-51 204.5 127 73.2
Nitab4.5_0002626g0030 Nicotiana tabacum HOM05D000468 ORTHO05D000548 4.7e-51 204.5 135 74.1
VMungo1383G3501 Vigna mungo HOM05D006897 ORTHO05D008825 6.2e-51 204.1 129 75.2
unitig_27.g25382 Utricularia gibba HOM05D006897 ORTHO05D008825 1.4e-50 203.0 125 76.0
Cfa017644 Carpinus fangiana HOM05D006897 ORTHO05D008825 1.8e-50 202.6 129 76.7
HanXRQChr13g0400941 Helianthus annuus HOM05D006897 ORTHO05D008825 1.8e-50 202.6 127 76.4
Phvul.001G180700 Phaseolus vulgaris HOM05D006897 ORTHO05D008825 4.0e-50 201.4 129 74.4
EL10Ac7g16667 Beta vulgaris HOM05D006897 ORTHO05D008825 9.0e-50 200.3 127 73.2
arahy.Tifrunner.gnm1.ann1.12U4ZA Arachis hypogaea HOM05D006897 ORTHO05D008825 1.2e-49 199.9 129 73.6
Nitab4.5_0000063g0200 Nicotiana tabacum HOM05D006897 ORTHO05D008825 1.2e-49 199.9 121 78.5
Nitab4.5_0009369g0010 Nicotiana tabacum HOM05D006897 ORTHO05D008825 4.4e-49 198.0 127 75.6
TWI74G0074 Tripterygium wilfordii HOM05D006897 ORTHO05D008825 4.4e-49 198.0 127 72.4
Sed0006529 Sechium edule HOM05D006897 ORTHO05D008825 5.8e-49 197.6 130 72.3
Glyma.19G185800 Glycine max HOM05D006897 ORTHO05D008825 7.6e-49 197.2 124 75.0
Eucgr.A01649 Eucalyptus grandis HOM05D006897 ORTHO05D008825 1.3e-48 196.4 127 75.6
Lalb_Chr01g0018621 Lupinus albus HOM05D006897 ORTHO05D008825 1.3e-48 196.4 130 74.6
TPR.G32809 Trifolium pratense HOM05D006897 ORTHO05D008825 1.3e-48 196.4 127 74.0
Potri.006G122200 Populus trichocarpa HOM05D006897 ORTHO05D008825 1.7e-48 196.1 129 72.9
Lj1g0004142 Lotus japonicus HOM05D006897 ORTHO05D008825 2.2e-48 195.7 131 71.8
CiPaw.09G169900 Carya illinoinensis HOM05D006897 ORTHO05D008825 2.9e-48 195.3 129 73.6
SGA_v2.0_scaffold40G15485 Striga asiatica HOM05D006897 ORTHO05D008825 2.9e-48 195.3 127 74.8
Gohir.D11G342700 Gossypium hirsutum HOM05D006897 ORTHO05D008825 1.4e-47 193.0 127 72.4
Gorai.007G372800 Gossypium raimondii HOM05D006897 ORTHO05D008825 1.4e-47 193.0 127 72.4
Ciclev10013772m.g Citrus clementina HOM05D006897 ORTHO05D008825 1.9e-47 192.6 129 70.5
Medtr7g102930 Medicago truncatula HOM05D006897 ORTHO05D008825 1.9e-47 192.6 118 72.9
RcHm_v2.0_Chr3g0470611 Rosa chinensis HOM05D006897 ORTHO05D008825 1.9e-47 192.6 130 69.2
Cpa.g.sc92.100 Carica papaya HOM05D006897 ORTHO05D008825 4.2e-47 191.4 127 70.1
COL.COLO4_26923 Corchorus olitorius HOM05D006897 ORTHO05D008825 4.2e-47 191.4 127 70.1
ECA233G4308 Erigeron canadensis HOM05D000468 ORTHO05D000548 4.2e-47 191.4 120 75.8
Sc02g0001520 Simmondsia chinensis HOM05D006897 ORTHO05D008825 4.2e-47 191.4 127 70.9
Gohir.A11G323600 Gossypium hirsutum HOM05D006897 ORTHO05D008825 7.1e-47 190.7 127 71.7
Sed0016332 Sechium edule HOM05D006897 ORTHO05D008825 7.1e-47 190.7 131 69.5
Atru.chr8.1762 Acer truncatum HOM05D006897 ORTHO05D008825 9.3e-47 190.3 131 69.5
Solyc10g083910.3 Solanum lycopersicum HOM05D006897 ORTHO05D008825 9.3e-47 190.3 105 84.8
Prupe.7G126900 Prunus persica HOM05D006897 ORTHO05D008825 1.2e-46 189.9 130 70.8
MD12G1108500 Malus domestica HOM05D006897 ORTHO05D008825 1.6e-46 189.5 129 71.3
QL07p042737 Quercus lobata HOM05D006897 ORTHO05D008825 1.6e-46 189.5 171 59.6
FAN14G2109 Fragaria x ananassa HOM05D006897 ORTHO05D008825 2.1e-46 189.1 129 69.0
Psat3g039920 Pisum sativum HOM05D006897 ORTHO05D008825 2.1e-46 189.1 118 73.7
Aqoxy1G01120 Aquilegia oxysepala HOM05D006897 ORTHO05D008825 3.5e-46 188.3 127 71.7
FvH4_6g16650 Fragaria vesca HOM05D006897 ORTHO05D008825 6.0e-46 187.6 129 68.2
FAN05G2962 Fragaria x ananassa HOM05D006897 ORTHO05D008825 6.0e-46 187.6 129 67.4
FAN05G5588 Fragaria x ananassa HOM05D006897 ORTHO05D008825 7.8e-46 187.2 129 67.4
Sabra06G0096400 Salix brachista HOM05D006897 ORTHO05D008825 7.8e-46 187.2 146 65.1
FAN09G4221 Fragaria x ananassa HOM05D006897 ORTHO05D008825 1.0e-45 186.8 129 67.4
MD04G1090000 Malus domestica HOM05D006897 ORTHO05D008825 1.3e-45 186.4 130 70.0
CsaV3_3G036130 Cucumis sativus L. HOM05D006897 ORTHO05D008825 1.7e-45 186.0 130 71.5
Carub.0004s1868 Capsella rubella HOM05D006897 ORTHO05D008825 3.0e-45 185.3 127 63.8
AL4G33030 Arabidopsis lyrata HOM05D006897 ORTHO05D008825 3.9e-45 184.9 127 63.8
Hund26628 Selenicereus undatus HOM05D006897 ORTHO05D008825 6.6e-45 184.1 127 66.1
AT2G36835 Arabidopsis thaliana HOM05D006897 ORTHO05D008825 8.7e-45 183.7 127 63.0
MBI04_g13674_MAGBIO Magnolia biondii HOM05D000468 ORTHO05D000548 1.1e-44 183.3 127 68.5
Oeu041483.1 Olea europaea HOM05D006897 ORTHO05D008825 1.9e-44 182.6 110 77.3
Sp4g19090 Schrenkiella parvula HOM05D006897 ORTHO05D008825 2.5e-44 182.2 127 61.4
A05p09040 Brassica napus HOM05D006897 ORTHO05D008825 3.3e-44 181.8 127 61.4
BraA05t19865Z Brassica rapa HOM05D006897 ORTHO05D008825 3.3e-44 181.8 127 61.4
Thhalv10017426m.g Eutrema salsugineum HOM05D006897 ORTHO05D008825 3.3e-44 181.8 127 61.4
TAR623G0762 Trochodendron aralioides HOM05D000468 ORTHO05D000548 3.3e-44 181.8 121 71.9
Nn2g13847 Nelumbo nucifera HOM05D006897 ORTHO05D008825 5.6e-44 181.0 121 70.2
PSO339G3187 Papaver somniferum HOM05D006897 ORTHO05D008825 7.3e-44 180.6 127 68.5
Medtr0050s0130 Medicago truncatula HOM05D006897 ORTHO05D008825 1.3e-43 179.9 119 70.6
ClCG10G019960 Citrullus lanatus HOM05D006897 ORTHO05D008825 1.6e-43 179.5 138 68.1
BcaC02g11805 Brassica carinata HOM05D006897 ORTHO05D008825 2.8e-43 178.7 128 61.7
C04p11190 Brassica napus HOM05D006897 ORTHO05D008825 2.8e-43 178.7 128 61.7
BolC4t22765H Brassica oleracea HOM05D006897 ORTHO05D008825 2.8e-43 178.7 128 61.7
BcaB02g09328 Brassica carinata HOM05D006897 ORTHO05D008825 4.8e-43 177.9 128 60.9
AUR62026928 Chenopodium quinoa HOM05D006897 ORTHO05D008825 4.8e-43 177.9 128 67.2
PSO063G5108 Papaver somniferum HOM05D006897 ORTHO05D008825 6.2e-43 177.6 127 67.7
CARHR131290 Cardamine hirsuta HOM05D006897 ORTHO05D008825 1.8e-42 176.0 130 60.0
AUR62041582 Chenopodium quinoa HOM05D006897 ORTHO05D008825 1.8e-42 176.0 128 67.2
MELO3C009375.2 Cucumis melo HOM05D006897 ORTHO05D008825 1.8e-42 176.0 146 63.0
Nn6g35243 Nelumbo nucifera HOM05D006897 ORTHO05D008825 5.3e-42 174.5 125 67.2
CDE05G1066 Ceratophyllum demersum HOM05D006897 ORTHO05D008825 3.4e-41 171.8 119 67.2
Duzib093G0551 Durio zibethinus HOM05D006897 ORTHO05D008825 1.7e-40 169.5 127 65.4
Nitab4.5_0000527g0030 Nicotiana tabacum HOM05D006897 ORTHO05D008825 4.9e-40 167.9 110 72.7
CDE02G4617 Ceratophyllum demersum HOM05D006897 ORTHO05D008825 8.4e-40 167.2 119 65.5
HPP92_010447 Vanilla planifolia HOM05D006897 ORTHO05D008825 2.4e-39 165.6 120 60.0
Glyma.03G185300 Glycine max HOM05D006897 ORTHO05D008825 7.1e-39 164.1 107 70.1
Aa31LG5G22050 Aethionema arabicum HOM05D006897 ORTHO05D008825 3.7e-35 151.8 110 58.2
Gohir.D04G109600 Gossypium hirsutum HOM05D006897 ORTHO05D008825 3.7e-35 151.8 111 64.0
HanXRQChr13g0388291 Helianthus annuus HOM05D006897 ORTHO05D008825 3.7e-35 151.8 97 73.2
Dinv37330 Davidia involucrata HOM05D006897 ORTHO05D000180 6.2e-35 151.0 90 80.0
Gorai.009G413700 Gossypium raimondii HOM05D006897 ORTHO05D008825 1.2e-33 146.7 111 62.2
HPP92_010241 Vanilla planifolia HOM05D006897 ORTHO05D008825 4.5e-33 144.8 104 58.7
Thecc.05G070500 Theobroma cacao HOM05D006897 ORTHO05D008825 1.3e-32 143.3 127 60.6
Zm00001eb369960 Zea mays HOM05D006897 ORTHO05D008825 8.4e-32 140.6 122 53.3
Lj3A989T53 Lonicera japonica HOM05D006897 ORTHO05D008825 4.2e-31 138.3 96 70.8
Os01g0776700 Oryza sativa ssp. japonica HOM05D006897 ORTHO05D008825 7.1e-31 137.5 106 58.5
SalBow3G3382 Salvia bowleyana HOM05D006897 ORTHO05D008825 1.0e-29 133.7 125 54.4
Peaxi162Scf00311g01426 Petunia axillaris HOM05D006897 ORTHO05D008825 3.0e-29 132.1 82 76.8
Zm00001eb151640 Zea mays HOM05D006897 ORTHO05D008825 5.1e-29 131.3 122 50.0
Haze_20509 Corylus avellana HOM05D006897 ORTHO05D008825 6.7e-29 131.0 90 71.1
SEGI_02421 Sequoiadendron giganteum HOM05D006897 ORTHO05D008825 1.1e-26 123.6 107 53.3
Duzib106G0008 Durio zibethinus HOM05D006897 ORTHO05D008825 1.4e-26 123.2 77 71.4
Rhsim04G0141800 Rhododendron simsii HOM05D006897 ORTHO05D008825 4.0e-26 121.7 79 67.1
Mapoly0013s0170 Marchantia polymorpha HOM05D006897 ORTHO05D008825 1.2e-25 120.2 133 45.9
SMO134G0180 Selaginella moellendorffii HOM05D006897 ORTHO05D008825 1.7e-24 116.3 117 47.9
AagrBONN_evm.TU.Sc2ySwM_340.262 Anthoceros agrestis HOM05D006897 ORTHO05D008825 6.5e-24 114.4 137 43.8
AagrBONN_evm.TU.Sc2ySwM_228.4541 Anthoceros agrestis HOM05D006897 ORTHO05D008825 1.4e-23 113.2 139 42.4
Pp3c2_31470 Physcomitrium patens HOM05D006897 ORTHO05D008825 7.1e-23 110.9 114 48.2
Actinidia32484 Actinidia chinensis HOM05D006897 ORTHO05D008825 1.6e-22 109.8 66 72.7
Peaxi162Scf00658g00012 Petunia axillaris HOM05D006897 ORTHO05D008825 8.7e-21 104.0 127 47.2
arahy.Tifrunner.gnm1.ann1.Y93F21 Arachis hypogaea HOM05D006897 ORTHO05D008825 6.3e-19 97.8 129 45.0
Rhsim04G0141900 Rhododendron simsii HOM05D006897 ORTHO05D008825 7.2e-15 84.3 50 80.0
HPP92_010165 Vanilla planifolia HOM05D006897 ORTHO05D008825 2.1e-14 82.8 63 54.0
Actinidia31321 Actinidia chinensis HOM05D006897 ORTHO05D008825 4.3e-12 75.1 59 64.4
Nitab4.5_0003762g0010 Nicotiana tabacum HOM05D006897 ORTHO05D008825 5.7e-12 74.7 65 56.9
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 4.5e-09 65.1 43 67.4
Sabra04G0106300 Salix brachista HOM05D006897 ORTHO05D008825 2.2e-08 62.8 39 71.8


User provided reference genes

Program Settings