Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 7.8e-302 1039.6 514 100.0
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 6.9e-242 840.5 514 79.4
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 7.1e-239 830.5 511 79.6
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.2e-238 829.7 514 77.4
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.0e-237 826.6 514 79.0
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.0e-237 825.1 514 77.8
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.5e-233 812.8 515 77.3
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.1e-231 806.6 514 76.1
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.5e-231 805.4 514 75.9
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 7.9e-230 800.4 514 76.3
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 4.3e-228 794.7 514 75.9
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 7.4e-228 793.9 514 76.1
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 9.7e-228 793.5 514 75.9
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.7e-227 792.7 514 75.9
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.4e-226 789.6 514 76.3
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 4.1e-226 788.1 513 74.7
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 9.1e-226 786.9 514 74.7
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.3e-224 783.1 513 74.9
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.9e-224 781.9 548 70.1
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.1e-223 780.0 511 74.2
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.2e-223 777.3 512 74.8
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 9.4e-223 776.9 490 77.3
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 1.2e-222 776.5 512 74.6
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.6e-222 775.0 511 74.8
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.4e-221 773.1 479 79.5
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 3.0e-221 771.9 514 73.7
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 6.7e-221 770.8 513 73.7
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 8.8e-221 770.4 514 73.2
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 3.3e-220 768.5 513 74.5
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 4.4e-220 768.1 514 73.0
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.7e-219 766.1 513 73.3
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 1.4e-218 763.1 508 72.6
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 2.4e-218 762.3 513 73.5
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 3.1e-218 761.9 514 73.0
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 4.1e-218 761.5 513 74.3
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 7.0e-218 760.8 514 72.8
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 2.6e-217 758.8 512 73.6
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.5e-217 758.4 514 72.8
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 3.5e-217 758.4 514 70.2
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 4.5e-217 758.1 511 72.6
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 5.9e-217 757.7 513 71.2
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.7e-216 756.1 512 73.8
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.9e-216 755.4 503 73.6
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 5.0e-216 754.6 513 71.2
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 6.5e-216 754.2 512 72.5
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.5e-216 754.2 503 73.6
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.9e-215 752.7 514 72.6
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 5.5e-215 751.1 513 72.1
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 9.4e-215 750.4 514 72.0
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.2e-214 750.0 514 71.8
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 6.1e-214 747.7 452 80.1
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 6.1e-214 747.7 514 72.8
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 2.3e-213 745.7 512 72.1
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 3.0e-213 745.3 507 71.8
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 3.9e-213 745.0 513 72.7
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 8.8e-213 743.8 513 70.4
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 8.8e-213 743.8 514 72.6
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 3.3e-212 741.9 601 63.1
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 5.7e-212 741.1 526 69.6
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 7.4e-212 740.7 552 67.2
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 2.8e-211 738.8 552 67.0
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.8e-211 738.8 514 72.2
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.1e-210 736.9 512 71.1
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.4e-210 736.5 491 73.5
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 2.4e-210 735.7 514 72.2
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.2e-209 733.4 512 69.9
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.6e-209 733.0 509 70.7
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.6e-209 733.0 516 70.0
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 7.7e-209 730.7 515 71.7
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 7.7e-209 730.7 515 70.3
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.0e-208 728.0 514 71.4
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 8.5e-208 727.2 512 70.1
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.5e-207 726.5 512 70.3
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.9e-207 726.1 512 70.1
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.9e-207 726.1 514 69.5
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 4.2e-207 724.9 512 69.9
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.6e-206 723.0 512 70.1
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.6e-206 723.0 507 69.8
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 2.1e-206 722.6 512 69.9
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 3.6e-206 721.8 512 69.3
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 6.1e-206 721.1 513 70.0
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 6.1e-206 721.1 513 70.0
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 6.1e-206 721.1 512 69.9
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 6.1e-206 721.1 513 70.0
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.8e-205 719.5 512 69.9
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.3e-205 719.2 520 68.8
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.3e-205 719.2 528 69.1
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 3.0e-205 718.8 513 69.6
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 4.0e-205 718.4 503 70.4
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 6.8e-205 717.6 514 70.6
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 2.0e-204 716.1 512 69.1
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 3.4e-204 715.3 567 64.4
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 5.7e-204 714.5 513 69.2
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 7.5e-204 714.1 511 67.9
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 9.7e-204 713.8 512 68.8
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.3e-203 713.4 515 69.1
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 1.3e-203 713.4 512 68.6
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.4e-202 709.9 488 71.7
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.4e-202 709.1 513 69.6
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 3.1e-202 708.8 526 68.8
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.1e-202 707.2 513 69.6
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.0e-200 703.7 512 68.9
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 1.7e-200 703.0 480 72.3
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.2e-198 696.8 478 71.8
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 4.7e-198 694.9 513 67.3
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 4.8e-195 684.9 471 71.8
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 3.1e-194 682.2 465 72.5
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 7.0e-194 681.0 584 59.9
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.2e-193 680.2 502 67.1
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.7e-193 679.1 511 65.8
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.7e-192 676.4 514 68.3
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.5e-191 673.3 513 67.3
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.9e-191 672.9 511 65.6
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.9e-191 672.9 513 67.3
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 9.5e-191 670.6 515 65.2
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 6.1e-190 667.9 504 66.3
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 3.0e-189 665.6 404 79.2
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 9.8e-188 660.6 512 65.0
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 1.3e-187 660.2 454 72.0
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.3e-187 657.9 539 64.4
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 7.0e-186 654.4 511 63.0
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 5.2e-181 638.3 455 69.5
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.3e-179 633.6 514 63.8
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.7e-177 625.9 404 75.0
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 7.3e-159 564.7 664 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 9.6e-159 564.3 535 55.0
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 6.2e-158 561.6 480 62.1
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 2.2e-155 553.1 542 53.7
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 1.1e-143 514.2 422 62.1
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.8e-141 506.9 457 58.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.4e-133 479.9 273 83.5
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 3.8e-131 472.6 451 57.2
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 6.7e-128 461.8 339 68.1
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 8.5e-115 418.3 275 75.3
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 3.4e-108 396.4 279 70.3
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 7.5e-95 352.1 244 71.3
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 2.0e-87 327.4 242 66.1
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 5.9e-84 315.8 212 71.2
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 7.7e-84 315.5 264 61.7
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 7.5e-79 298.9 219 70.8
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.7e-70 271.2 508 37.8
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 4.3e-66 256.5 562 32.7
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 8.6e-59 232.3 395 37.0
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 2.4e-45 187.6 143 67.1
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.3e-42 176.8 183 53.0
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.9e-40 169.1 121 66.1
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 9.9e-39 165.6 110 75.5
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.7e-36 157.5 218 41.7
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.7e-35 154.8 112 65.2
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 9.3e-29 132.5 68 89.7
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.4e-23 114.0 63 87.3
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 9.6e-18 95.9 170 28.2
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 3.7e-17 94.0 114 48.2
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 4.8e-17 93.6 73 67.1
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.0e-14 85.9 61 68.9
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.8e-14 84.0 181 34.3
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-13 82.4 181 33.7
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 3.3e-10 70.9 241 26.6
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 3.7e-09 67.4 86 44.2
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.1e-08 63.9 36 83.3
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 4.5e-07 60.5 36 75.0
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 7.6e-07 59.7 118 31.4
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-06 58.2 111 38.7


User provided reference genes

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