Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g04320 Coffea canephora HOM05D007534 ORTHO05D009540 6.0e-155 550.8 283 100.0
Cpa.g.sc102.24 Carica papaya HOM05D007534 ORTHO05D009540 8.0e-83 311.2 230 70.4
Manes.09G065300 Manihot esculenta HOM05D007534 ORTHO05D009540 5.2e-82 308.5 263 66.2
Eucgr.A01668 Eucalyptus grandis HOM05D007534 ORTHO05D009540 3.4e-81 305.8 258 65.9
Duzib093G0985 Durio zibethinus HOM05D007534 ORTHO05D009540 4.4e-81 305.4 248 66.5
Gohir.D01G204300 Gossypium hirsutum HOM05D007534 ORTHO05D009540 5.8e-81 305.1 234 70.1
CAN.G900.25 Capsicum annuum HOM05D007534 ORTHO05D009540 9.8e-81 304.3 175 84.0
Oeu005026.1 Olea europaea HOM05D007534 ORTHO05D009540 9.8e-81 304.3 267 65.2
Thecc.05G068400 Theobroma cacao HOM05D007534 ORTHO05D009540 9.8e-81 304.3 250 65.6
CANSAT80G0853 Cannabis sativa HOM05D007534 ORTHO05D009540 1.3e-80 303.9 202 75.7
MSTRG.19184 Avicennia marina HOM05D007534 ORTHO05D009540 4.9e-80 302.0 242 66.1
Gorai.002G246500 Gossypium raimondii HOM05D007534 ORTHO05D009540 4.9e-80 302.0 235 70.2
Potri.016G098900 Populus trichocarpa HOM05D007534 ORTHO05D009540 4.9e-80 302.0 187 80.2
Solyc09g008270.3 Solanum lycopersicum HOM05D007534 ORTHO05D009540 6.4e-80 301.6 228 68.9
vmacro08785 Vaccinium macrocarpon HOM05D007534 ORTHO05D009540 6.4e-80 301.6 254 65.7
Sopen09g003090 Solanum pennellii HOM05D007534 ORTHO05D009540 1.1e-79 300.8 167 85.6
COL.COLO4_26947 Corchorus olitorius HOM05D007534 ORTHO05D009540 2.4e-79 299.7 264 63.6
AUR62042063 Chenopodium quinoa HOM05D007534 ORTHO05D009540 5.4e-79 298.5 244 64.3
TWI53G0173 Tripterygium wilfordii HOM05D007534 ORTHO05D009540 5.4e-79 298.5 252 67.1
GSVIVG01033650001 Vitis vinifera HOM05D007534 ORTHO05D009540 7.0e-79 298.1 161 87.6
Nn2g13809 Nelumbo nucifera HOM05D007534 ORTHO05D009540 1.2e-78 297.4 253 65.6
PGSC0003DMG400003865 Solanum tuberosum HOM05D007534 ORTHO05D009540 1.2e-78 297.4 175 82.3
SalBow3G3627 Salvia bowleyana HOM05D007534 ORTHO05D009540 1.6e-78 297.0 244 65.2
Gohir.A01G213100 Gossypium hirsutum HOM05D007534 ORTHO05D009540 2.7e-78 296.2 233 68.7
HanXRQChr13g0400981 Helianthus annuus HOM05D007534 ORTHO05D009540 4.6e-78 295.4 247 64.8
Sabra16G0099100 Salix brachista HOM05D007534 ORTHO05D009540 6.0e-78 295.0 265 62.6
Sc20g0005570 Simmondsia chinensis HOM05D007534 ORTHO05D009540 6.0e-78 295.0 249 63.9
TAR369G0058 Trochodendron aralioides HOM05D007534 ORTHO05D009540 1.7e-77 293.5 253 66.0
CsaV3_6G039950 Cucumis sativus L. HOM05D007534 ORTHO05D009540 5.0e-77 292.0 220 69.5
arahy.Tifrunner.gnm1.ann1.39JB5J Arachis hypogaea HOM05D007534 ORTHO05D009540 6.6e-77 291.6 231 67.5
arahy.Tifrunner.gnm1.ann1.C885SU Arachis hypogaea HOM05D007534 ORTHO05D009540 6.6e-77 291.6 231 67.5
CiPaw.10G129000 Carya illinoinensis HOM05D007534 ORTHO05D009540 6.6e-77 291.6 186 77.4
QL07p043071 Quercus lobata HOM05D007534 ORTHO05D009540 6.6e-77 291.6 244 64.8
SGA_v2.0_scaffold75G24837 Striga asiatica HOM05D007534 ORTHO05D009540 6.6e-77 291.6 242 65.3
Atru.chr8.1788 Acer truncatum HOM05D007534 ORTHO05D009540 1.1e-76 290.8 255 63.9
ClCG04G009370 Citrullus lanatus HOM05D007534 ORTHO05D009540 1.1e-76 290.8 254 64.2
Dinv37321 Davidia involucrata HOM05D001037 ORTHO05D000888 1.9e-76 290.0 259 64.1
Psat6g074600 Pisum sativum HOM05D007534 ORTHO05D009540 3.3e-76 289.3 225 67.1
Ca_28252_v3 Cicer arietinum L. HOM05D007534 ORTHO05D009540 4.3e-76 288.9 172 80.8
Migut.J00648 Erythranthe guttata HOM05D007534 ORTHO05D009540 4.3e-76 288.9 226 66.8
Ciclev10012507m.g Citrus clementina HOM05D007534 ORTHO05D009540 7.3e-76 288.1 244 64.3
THA.LOC104807064 Tarenaya hassleriana HOM05D007534 ORTHO05D009540 3.6e-75 285.8 181 76.8
Glyma.13G141700 Glycine max HOM05D007534 ORTHO05D009540 4.7e-75 285.4 180 78.3
Medtr1g063070 Medicago truncatula HOM05D007534 ORTHO05D009540 6.2e-75 285.0 228 67.1
MELO3C024472.2 Cucumis melo HOM05D007534 ORTHO05D009540 1.8e-74 283.5 266 60.5
Aqoxy1G01139 Aquilegia oxysepala HOM05D007534 ORTHO05D009540 3.1e-74 282.7 256 60.9
Lj2A120T45 Lonicera japonica HOM05D007534 ORTHO05D009540 4.0e-74 282.3 251 61.8
Actinidia32489 Actinidia chinensis HOM05D007534 ORTHO05D009540 5.2e-74 282.0 198 73.2
Lalb_Chr06g0171761 Lupinus albus HOM05D007534 ORTHO05D009540 5.2e-74 282.0 183 77.0
Sed0017969 Sechium edule HOM05D007534 ORTHO05D009540 5.2e-74 282.0 161 83.9
Prupe.7G128600 Prunus persica HOM05D007534 ORTHO05D009540 6.8e-74 281.6 226 65.5
Phvul.007G147900 Phaseolus vulgaris HOM05D007534 ORTHO05D009540 2.0e-73 280.0 180 77.2
BraA05t19860Z Brassica rapa HOM05D007534 ORTHO05D009540 2.6e-73 279.6 214 68.7
Os03g0137600 Oryza sativa ssp. japonica HOM05D007534 ORTHO05D009540 2.6e-73 279.6 176 76.1
Lsat_1_v5_gn_6_24941 Lactuca sativa HOM05D007534 ORTHO05D009540 5.8e-73 278.5 245 62.4
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 1.7e-72 276.9 267 58.4
Lj5g0014413 Lotus japonicus HOM05D007534 ORTHO05D009540 1.7e-72 276.9 173 79.2
AL4G33100 Arabidopsis lyrata HOM05D007534 ORTHO05D009540 3.7e-72 275.8 246 64.2
BolC4t22757H Brassica oleracea HOM05D007534 ORTHO05D009540 6.4e-72 275.0 256 62.1
Zm00001eb003080 Zea mays HOM05D007534 ORTHO05D009540 6.4e-72 275.0 160 80.0
AT2G36885 Arabidopsis thaliana HOM05D007534 ORTHO05D009540 1.1e-71 274.2 252 63.1
Carub.0004s1873 Capsella rubella HOM05D007534 ORTHO05D009540 3.2e-71 272.7 247 62.8
Nitab4.5_0000578g0110 Nicotiana tabacum HOM05D007534 ORTHO05D009540 3.2e-71 272.7 251 61.8
A05p08980 Brassica napus HOM05D007534 ORTHO05D009540 5.4e-71 271.9 172 77.3
Rhsim04G0144000 Rhododendron simsii HOM05D007534 ORTHO05D009540 7.0e-71 271.6 300 57.7
RcHm_v2.0_Chr3g0470401 Rosa chinensis HOM05D007534 ORTHO05D009540 9.2e-71 271.2 252 61.5
C04p11090 Brassica napus HOM05D007534 ORTHO05D009540 2.1e-70 270.0 264 60.6
CARHR131340 Cardamine hirsuta HOM05D007534 ORTHO05D009540 3.5e-70 269.2 246 60.6
BcaB02g09324 Brassica carinata HOM05D007534 ORTHO05D009540 4.6e-70 268.9 265 58.1
PSO266G0073 Papaver somniferum HOM05D007534 ORTHO05D009540 6.0e-70 268.5 187 71.7
Hma1.2p1_0205F.1_g086900 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 1.3e-69 267.3 232 64.2
BcaC02g11812 Brassica carinata HOM05D007534 ORTHO05D009540 1.5e-68 263.8 263 58.2
Cfa017628 Carpinus fangiana HOM05D007534 ORTHO05D009540 3.3e-68 262.7 250 60.4
ECA233G2496 Erigeron canadensis HOM05D007534 ORTHO05D009540 9.5e-68 261.2 160 76.9
CDE09G0108 Ceratophyllum demersum HOM05D007534 ORTHO05D009540 3.1e-66 256.1 182 70.3
Sp4g19170 Schrenkiella parvula HOM05D007534 ORTHO05D009540 1.2e-65 254.2 176 71.0
Nitab4.5_0008624g0030 Nicotiana tabacum HOM05D007534 ORTHO05D009540 2.9e-64 249.6 252 57.5
Thhalv10017130m.g Eutrema salsugineum HOM05D007534 ORTHO05D009540 6.4e-64 248.4 159 76.7
ATR0723G005 Amborella trichopoda HOM05D007534 ORTHO05D009540 8.3e-64 248.1 183 65.0
Aa31LG5G22110 Aethionema arabicum HOM05D007534 ORTHO05D009540 7.1e-63 245.0 242 58.7
MD12G1110000 Malus domestica HOM05D007534 ORTHO05D009540 1.7e-61 240.4 256 57.4
Ah.15g092560 Amaranthus hybridus HOM05D007534 ORTHO05D009540 1.9e-60 236.9 234 56.0
Peaxi162Scf00847g00032 Petunia axillaris HOM05D007534 ORTHO05D009540 1.9e-60 236.9 252 54.8
CSS0046236 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D009540 3.6e-59 232.6 239 58.6
EL10Ac7g16645 Beta vulgaris HOM05D007534 ORTHO05D009540 1.7e-56 223.8 259 51.4
Pp3c2_17450 Physcomitrium patens HOM05D007534 ORTHO05D009540 1.7e-56 223.8 260 50.4
PGR004G0787 Punica granatum HOM05D007534 ORTHO05D009540 1.7e-56 223.8 188 64.9
Hma1.2p1_0828F.1_g225100 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 1.4e-55 220.7 130 83.1
Mapoly0049s0045 Marchantia polymorpha HOM05D007534 ORTHO05D009540 3.2e-55 219.5 163 63.8
AagrBONN_evm.TU.Sc2ySwM_117.1862 Anthoceros agrestis HOM05D007534 ORTHO05D009540 2.7e-54 216.5 261 52.1
unitig_22.g5100 Utricularia gibba HOM05D007534 ORTHO05D009540 6.9e-50 201.8 123 77.2
TPR.G11259 Trifolium pratense HOM05D007534 ORTHO05D009540 4.4e-49 199.1 108 88.0
QL03p002371 Quercus lobata HOM05D007534 ORTHO05D009540 3.2e-47 193.0 160 65.6
AUR62026915 Chenopodium quinoa HOM05D007534 ORTHO05D009540 6.6e-45 185.3 181 58.6
Cre02.g143450 Chlamydomonas reinhardtii HOM05D007534 ORTHO05D009540 4.6e-38 162.5 170 51.2
FAN15G1333 Fragaria x ananassa HOM05D007534 ORTHO05D009540 1.3e-37 161.0 94 79.8
CSS0001990 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D012079 4.3e-28 129.4 75 84.0
MD04G1092000 Malus domestica HOM05D007534 ORTHO05D009540 2.0e-25 120.6 112 57.1
ATR0680G419 Amborella trichopoda HOM05D007534 ORTHO05D009540 1.7e-24 117.5 65 84.6
Rhsim04G0142700 Rhododendron simsii HOM05D007534 ORTHO05D009540 4.1e-18 96.3 58 81.0
MD04G1092200 Malus domestica HOM05D007534 ORTHO05D009540 9.4e-15 85.1 91 49.5


User provided reference genes

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