Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.4e-47 192.6 94 100.0
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 3.3e-41 171.4 94 89.4
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 7.3e-41 170.2 94 89.4
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 7.3e-41 170.2 92 89.1
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 9.6e-41 169.9 94 87.2
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 1.3e-40 169.5 94 88.3
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 3.6e-40 167.9 93 87.1
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 6.2e-40 167.2 94 87.2
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 6.2e-40 167.2 94 86.2
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 8.1e-40 166.8 94 86.2
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 1.1e-39 166.4 94 85.1
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 2.4e-39 165.2 94 86.2
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 2.4e-39 165.2 94 84.0
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 4.0e-39 164.5 93 84.9
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 4.0e-39 164.5 94 85.1
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 5.3e-39 164.1 94 85.1
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 5.3e-39 164.1 94 85.1
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 6.9e-39 163.7 94 84.0
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 6.9e-39 163.7 94 84.0
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 6.9e-39 163.7 94 84.0
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 6.9e-39 163.7 94 84.0
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 6.9e-39 163.7 94 85.1
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 9.0e-39 163.3 93 84.9
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 9.0e-39 163.3 93 82.8
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 1.2e-38 162.9 94 83.0
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.5e-38 162.5 94 83.0
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 1.5e-38 162.5 92 84.8
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 84.9
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 83.9
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 2.0e-38 162.2 94 84.0
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 2.0e-38 162.2 94 81.9
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 2.0e-38 162.2 94 81.9
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 2.0e-38 162.2 94 85.1
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 3.4e-38 161.4 94 84.0
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 4.5e-38 161.0 93 83.9
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 4.5e-38 161.0 93 82.8
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 7.6e-38 160.2 94 81.9
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.6e-38 160.2 94 81.9
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 7.6e-38 160.2 94 84.0
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 9.9e-38 159.8 94 81.9
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 9.9e-38 159.8 94 81.9
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 1.3e-37 159.5 94 81.9
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 1.3e-37 159.5 94 85.1
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.7e-37 159.1 94 84.0
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 1.7e-37 159.1 94 84.0
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.2e-37 158.7 92 83.7
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.2e-37 158.7 94 81.9
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 2.2e-37 158.7 94 81.9
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 2.9e-37 158.3 94 83.0
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 2.9e-37 158.3 94 83.0
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 2.9e-37 158.3 89 84.3
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.9e-37 158.3 94 80.9
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.9e-37 158.3 94 80.9
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 2.9e-37 158.3 94 80.9
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 2.9e-37 158.3 96 83.3
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 2.9e-37 158.3 96 83.3
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 2.9e-37 158.3 94 81.9
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 2.9e-37 158.3 83 92.8
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 2.9e-37 158.3 94 79.8
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 6.4e-37 157.1 92 83.7
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 6.4e-37 157.1 94 81.9
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 8.4e-37 156.8 94 79.8
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 8.4e-37 156.8 94 78.7
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 1.1e-36 156.4 94 80.9
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 1.1e-36 156.4 94 79.8
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 1.1e-36 156.4 94 79.8
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.4e-36 156.0 94 83.0
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 1.9e-36 155.6 93 80.6
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.4e-36 155.2 94 78.7
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 2.4e-36 155.2 94 79.8
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 4.2e-36 154.5 94 80.9
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 7.1e-36 153.7 94 75.5
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 7.1e-36 153.7 87 85.1
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 7.1e-36 153.7 92 83.7
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 9.3e-36 153.3 94 78.7
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.2e-35 152.9 87 85.1
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.2e-35 152.9 94 77.7
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.2e-35 152.9 92 79.3
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.2e-35 152.9 92 79.3
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.2e-35 152.9 94 79.8
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 2.1e-35 152.1 94 76.6
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 2.7e-35 151.8 95 78.9
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 2.7e-35 151.8 96 80.2
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 2.7e-35 151.8 96 80.2
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 4.6e-35 151.0 95 82.1
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 4.6e-35 151.0 91 81.3
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 4.6e-35 151.0 94 76.6
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 4.6e-35 151.0 94 76.6
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 6.0e-35 150.6 92 81.5
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 88 83.0
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.3e-34 149.4 93 79.6
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.3e-34 148.7 91 75.8
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 3.0e-34 148.3 89 82.0
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 5.1e-34 147.5 91 74.7
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 1.1e-33 146.4 89 79.8
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.1e-33 146.4 95 74.7
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.5e-33 146.0 88 80.7
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 1.5e-33 146.0 89 78.7
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 78.7
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 78.7
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.9e-33 145.6 92 81.5
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 2.5e-33 145.2 89 76.4
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 2.5e-33 145.2 94 73.4
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.3e-33 144.8 82 85.4
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 5.6e-33 144.1 91 74.7
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 5.6e-33 144.1 95 73.7
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 7.4e-33 143.7 95 73.7
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 7.4e-33 143.7 94 74.5
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 1.3e-32 142.9 95 72.6
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 1.6e-32 142.5 89 75.3
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 1.6e-32 142.5 89 75.3
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 1.6e-32 142.5 94 78.7
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.6e-32 142.5 92 75.0
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 2.1e-32 142.1 89 75.3
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 2.1e-32 142.1 89 75.3
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.1e-32 142.1 87 77.0
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 3.7e-32 141.4 83 77.1
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 4.8e-32 141.0 95 71.6
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 4.8e-32 141.0 95 71.6
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 4.8e-32 141.0 95 71.6
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 4.8e-32 141.0 95 71.6
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 4.8e-32 141.0 95 71.6
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 4.8e-32 141.0 94 76.6
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 8.1e-32 140.2 122 63.9
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 8.1e-32 140.2 91 71.4
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 6.9e-31 137.1 72 91.7
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 6.9e-31 137.1 93 74.2
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 9.0e-31 136.7 89 73.0
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.5e-30 134.4 91 75.8
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.7e-29 132.5 92 75.0
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 2.9e-29 131.7 77 83.1
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.8e-29 131.3 72 88.9
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 4.9e-29 131.0 71 90.1
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 4.9e-29 131.0 71 90.1
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.9e-29 131.0 72 90.3
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 4.9e-29 131.0 71 90.1
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 8.4e-29 130.2 117 59.0
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 2.5e-28 128.6 71 87.3
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 2.5e-28 128.6 71 87.3
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 3.2e-28 128.3 72 86.1
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 3.9e-26 121.3 72 83.3
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.1e-25 119.8 72 83.3
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.3e-24 116.3 72 80.6
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 1.3e-24 116.3 68 79.4
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.3e-24 116.3 96 61.5
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 1.6e-24 115.9 83 68.7
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 2.0e-22 109.0 82 70.7
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 2.6e-22 108.6 50 96.0
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 7.6e-22 107.1 71 73.2
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.7e-21 105.9 92 63.0
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.2e-20 101.7 99 55.6
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 2.1e-19 99.0 91 56.0
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 7.9e-19 97.1 77 62.3
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.2e-16 89.0 59 74.6
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.7e-16 88.2 52 80.8
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.7e-16 88.2 52 80.8
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.7e-16 88.2 52 80.8
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.7e-16 88.2 52 80.8
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 4.1e-15 84.7 75 52.0
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.5e-14 82.8 50 82.0
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.7e-14 80.5 48 77.1
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.2e-13 79.0 50 78.0
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.9e-13 78.6 49 75.5
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 6.5e-13 77.4 55 70.9
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 1.6e-11 72.8 44 77.3
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 2.1e-11 72.4 65 56.9


User provided reference genes

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