Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 1.3e-177 626.3 317 100.0
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 1.7e-113 413.3 317 67.8
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 3.2e-112 409.1 317 67.5
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 2.7e-111 406.0 285 69.5
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 1.3e-110 403.7 315 66.7
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 3.0e-110 402.5 314 66.2
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 4.3e-109 398.7 317 65.9
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 4.3e-109 398.7 317 65.9
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 9.5e-109 397.5 318 66.4
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 9.5e-109 397.5 340 62.1
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 4.7e-108 395.2 292 68.8
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 6.2e-108 394.8 318 68.2
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 1.1e-107 394.0 316 66.8
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 1.8e-107 393.3 322 66.1
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 2.3e-107 392.9 313 66.8
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 3.1e-107 392.5 313 66.5
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 5.2e-107 391.7 314 67.5
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 6.8e-107 391.3 305 67.2
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.2e-106 390.6 305 67.2
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.0e-106 389.8 305 67.5
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.0e-106 389.8 305 67.5
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 2.0e-106 389.8 303 69.3
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 2.6e-106 389.4 276 69.9
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 4.4e-106 388.7 311 64.6
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.3e-105 387.1 230 80.0
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 2.2e-105 386.3 311 66.9
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 6.4e-105 384.8 311 64.0
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 6.4e-105 384.8 311 64.0
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 8.4e-105 384.4 315 66.3
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 1.1e-104 384.0 311 64.3
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 1.9e-104 383.3 317 65.3
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 1.9e-104 383.3 315 65.1
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 5.4e-104 381.7 314 65.6
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 2.1e-103 379.8 290 69.0
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 4.6e-103 378.6 326 63.8
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 4.6e-103 378.6 326 63.8
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 7.8e-103 377.9 312 66.0
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 3.9e-102 375.6 314 63.7
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 5.1e-102 375.2 314 64.3
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 5.1e-102 375.2 313 63.6
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 1.9e-101 373.2 248 73.4
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.9e-101 373.2 320 62.2
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 7.3e-101 371.3 299 67.6
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 9.6e-101 370.9 282 66.3
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 1.2e-100 370.5 309 63.4
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 4.7e-100 368.6 320 61.2
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 8.1e-100 367.9 314 61.1
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.1e-99 367.5 252 70.6
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 2.4e-99 366.3 301 64.1
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 5.2e-99 365.2 216 78.2
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 6.9e-99 364.8 319 61.8
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 6.9e-99 364.8 306 62.1
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 2.6e-98 362.8 306 64.1
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 7.6e-98 361.3 332 60.2
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 9.9e-98 360.9 317 61.5
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 9.9e-98 360.9 301 65.1
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 1.3e-97 360.5 312 62.5
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 3.8e-97 359.0 250 70.0
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 1.9e-96 356.7 303 61.4
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 1.9e-96 356.7 232 73.3
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 3.2e-96 355.9 224 74.1
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 3.2e-96 355.9 220 75.0
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 4.2e-96 355.5 302 61.9
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 7.1e-96 354.8 306 63.7
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 1.2e-95 354.0 307 60.6
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 2.7e-95 352.8 303 62.7
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 3.5e-95 352.4 229 73.4
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 6.0e-95 351.7 307 61.2
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 6.0e-95 351.7 309 61.8
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 6.0e-95 351.7 201 82.1
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 6.0e-95 351.7 319 61.8
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 7.8e-95 351.3 317 59.6
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 7.8e-95 351.3 271 64.2
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 2.3e-94 349.7 240 70.8
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 2.3e-94 349.7 307 60.6
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 6.6e-94 348.2 226 73.5
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 8.7e-94 347.8 300 61.0
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 8.7e-94 347.8 300 61.0
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 1.5e-93 347.1 304 62.5
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.5e-93 347.1 233 72.1
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 3.3e-93 345.9 226 73.0
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 1.6e-92 343.6 218 74.8
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 2.8e-92 342.8 231 71.4
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 8.1e-92 341.3 211 74.9
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.1e-91 340.9 212 75.0
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 1.2e-90 337.4 243 70.8
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 7.6e-90 334.7 244 68.0
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 3.9e-86 322.4 301 57.8
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 5.1e-86 322.0 300 60.0
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 5.1e-86 322.0 232 67.7
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 6.2e-76 288.5 213 62.4
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 1.2e-74 284.3 261 59.0
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 1.3e-70 270.8 212 61.8
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 1.6e-68 263.8 181 73.5
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.2e-65 253.4 210 58.6
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 1.1e-64 251.1 213 55.4
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 3.0e-62 243.0 168 69.6
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 1.6e-60 237.3 230 60.9
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 3.1e-59 233.0 233 57.1
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 6.9e-59 231.9 183 63.9
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.7e-58 228.4 149 74.5
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.3e-57 227.6 234 48.3
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 1.9e-56 223.8 219 47.5
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 8.8e-54 214.9 191 52.4
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 4.4e-53 212.6 167 64.7
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 8.5e-49 198.4 162 64.2
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 6.7e-46 188.7 133 68.4
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.8e-44 183.3 139 64.7
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 1.3e-41 174.5 116 71.6
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 2.7e-34 150.2 95 74.7
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.2e-33 147.1 83 84.3
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.2e-33 147.1 83 84.3
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 2.0e-21 107.5 172 41.9
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 1.6e-18 97.8 111 46.8
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 2.7e-18 97.1 229 28.8
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 1.1e-11 75.1 63 66.7
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.0e-09 68.6 168 24.4
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.0e-09 68.6 138 28.3
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.3e-09 67.4 275 22.2
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 3.9e-09 66.6 227 23.8
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 5.0e-09 66.2 271 21.8
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 5.0e-09 66.2 42 69.0
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 5.0e-09 66.2 224 21.9
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 6.6e-09 65.9 224 22.3
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 8.6e-09 65.5 246 21.5
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.1e-08 65.1 240 21.2
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 2.5e-08 63.9 169 25.4
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 3.3e-08 63.5 168 22.6
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 5.6e-08 62.8 48 60.4
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.3e-08 62.4 238 21.4
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 9.5e-08 62.0 228 21.9
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.2e-07 61.6 229 21.8
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.6e-07 61.2 168 24.4
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 2.1e-07 60.8 168 25.6
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 4.7e-07 59.7 172 23.8
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 8.0e-07 58.9 57 54.4
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 2.3e-06 57.4 96 31.2
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 4.0e-06 56.6 130 23.8
FAN14G2601 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.0e-06 56.6 72 45.8
FAN14G5547 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.0e-06 56.6 72 45.8
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 4.0e-06 56.6 48 50.0


User provided reference genes

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