Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g03930 Coffea canephora HOM05D006467 ORTHO05D008012 3.2e-54 214.9 115 100.0
Oeu059967.1 Olea europaea HOM05D006467 ORTHO05D008012 1.9e-35 152.5 117 68.4
Peaxi162Scf00123g00014 Petunia axillaris HOM05D006467 ORTHO05D008012 4.9e-31 137.9 115 62.6
Lsat_1_v5_gn_2_109060 Lactuca sativa HOM05D006467 ORTHO05D008012 2.5e-30 135.6 114 58.8
Migut.J00532 Erythranthe guttata HOM05D006467 ORTHO05D008012 7.1e-30 134.0 121 59.5
CAN.G888.4 Capsicum annuum HOM05D006467 ORTHO05D008012 1.2e-29 133.3 112 61.6
Lj2A112T40 Lonicera japonica HOM05D006467 ORTHO05D008012 1.2e-29 133.3 114 61.4
Sopen09g002640 Solanum pennellii HOM05D006467 ORTHO05D008012 1.6e-29 132.9 115 61.7
Nitab4.5_0000101g0130 Nicotiana tabacum HOM05D006467 ORTHO05D008012 4.6e-29 131.3 115 60.9
PGSC0003DMG400021546 Solanum tuberosum HOM05D006467 ORTHO05D008012 4.6e-29 131.3 115 60.9
Dinv35529 Davidia involucrata HOM05D006467 ORTHO05D008012 7.9e-29 130.6 111 59.5
Solyc09g007800.3 Solanum lycopersicum HOM05D006467 ORTHO05D008012 7.9e-29 130.6 115 60.0
SalBow8G4982 Salvia bowleyana HOM05D006467 ORTHO05D008012 1.8e-28 129.4 117 59.0
MSTRG.19165 Avicennia marina HOM05D006467 ORTHO05D008012 3.0e-28 128.6 117 56.4
Dinv35757 Davidia involucrata HOM05D006467 ORTHO05D008012 3.0e-28 128.6 112 59.8
Nitab4.5_0003923g0010 Nicotiana tabacum HOM05D006467 ORTHO05D008012 3.0e-28 128.6 115 60.9
Hma1.2p1_0614F.1_g189470 Hydrangea macrophylla HOM05D006467 ORTHO05D008012 5.1e-28 127.9 112 58.0
Actinidia19675 Actinidia chinensis HOM05D006467 ORTHO05D008012 1.5e-27 126.3 111 59.5
FAN02G4276 Fragaria x ananassa HOM05D006467 ORTHO05D008012 1.5e-27 126.3 113 59.3
FAN09G2873 Fragaria x ananassa HOM05D006467 ORTHO05D008012 1.5e-27 126.3 113 58.4
RcHm_v2.0_Chr3g0469601 Rosa chinensis HOM05D006467 ORTHO05D008012 2.5e-27 125.6 112 57.1
GSVIVG01025685001 Vitis vinifera HOM05D006467 ORTHO05D008012 2.5e-27 125.6 114 57.0
CSS0042234 Camellia sinensis var. sinensis HOM05D006467 ORTHO05D008012 3.3e-27 125.2 111 57.7
Prupe.6G236600 Prunus persica HOM05D006467 ORTHO05D008012 4.3e-27 124.8 114 57.0
ECA238G0062 Erigeron canadensis HOM05D006467 ORTHO05D008012 9.6e-27 123.6 112 55.4
EL10Ac7g16554 Beta vulgaris HOM05D006467 ORTHO05D008012 1.3e-26 123.2 112 55.4
SGA_v2.0_scaffold40G15542 Striga asiatica HOM05D006467 ORTHO05D008012 1.6e-26 122.9 128 53.9
TAR369G0155 Trochodendron aralioides HOM05D006467 ORTHO05D008012 1.6e-26 122.9 114 55.3
Cpa.g.sc102.12 Carica papaya HOM05D006467 ORTHO05D008012 3.7e-26 121.7 114 53.5
FAN14G3947 Fragaria x ananassa HOM05D006467 ORTHO05D008012 3.7e-26 121.7 113 56.6
Sc02g0001830 Simmondsia chinensis HOM05D006467 ORTHO05D008012 4.8e-26 121.3 114 55.3
Ciclev10013106m.g Citrus clementina HOM05D006467 ORTHO05D008012 1.4e-25 119.8 112 54.5
Nn2g13105 Nelumbo nucifera HOM05D006467 ORTHO05D008012 1.8e-25 119.4 116 51.7
TAR623G0732 Trochodendron aralioides HOM05D006467 ORTHO05D008012 2.4e-25 119.0 114 51.8
Lj5g0010745 Lotus japonicus HOM05D006467 ORTHO05D008012 3.1e-25 118.6 115 53.0
Manes.08G007300 Manihot esculenta HOM05D006467 ORTHO05D008012 3.1e-25 118.6 109 57.8
MD04G1097300 Malus domestica HOM05D006467 ORTHO05D008012 4.1e-25 118.2 114 56.1
CiPaw.09G176000 Carya illinoinensis HOM05D006467 ORTHO05D008012 6.9e-25 117.5 116 53.4
Thecc.05G060700 Theobroma cacao HOM05D006467 ORTHO05D008012 6.9e-25 117.5 110 54.5
Glyma.10G053300 Glycine max HOM05D006467 ORTHO05D008012 9.0e-25 117.1 111 55.0
Ca_11474_v3 Cicer arietinum L. HOM05D006467 ORTHO05D008012 1.2e-24 116.7 115 51.3
TPR.G21203 Trifolium pratense HOM05D006467 ORTHO05D008012 1.2e-24 116.7 115 53.0
FvH4_6g15910 Fragaria vesca HOM05D006467 ORTHO05D008012 1.5e-24 116.3 120 51.7
MD12G1118700 Malus domestica HOM05D006467 ORTHO05D008012 1.5e-24 116.3 114 55.3
Glyma.13G140300 Glycine max HOM05D006467 ORTHO05D008012 2.0e-24 115.9 115 52.2
HanXRQChr07g0195271 Helianthus annuus HOM05D006467 ORTHO05D008012 3.4e-24 115.2 115 53.9
Medtr1g064490 Medicago truncatula HOM05D006467 ORTHO05D008012 4.5e-24 114.8 111 54.1
Potri.016G090000 Populus trichocarpa HOM05D006467 ORTHO05D008012 4.5e-24 114.8 109 54.1
Cfa017565 Carpinus fangiana HOM05D006467 ORTHO05D008012 7.6e-24 114.0 116 50.0
PSO063G5019 Papaver somniferum HOM05D006467 ORTHO05D008012 7.6e-24 114.0 113 52.2
PSO339G1849 Papaver somniferum HOM05D006467 ORTHO05D008012 7.6e-24 114.0 113 52.2
VMungo0720G0455 Vigna mungo HOM05D006467 ORTHO05D008012 7.6e-24 114.0 115 49.6
Gohir.A04G074100 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.0e-23 113.6 110 56.4
Aqoxy1G01232 Aquilegia oxysepala HOM05D006467 ORTHO05D008012 1.3e-23 113.2 113 49.6
Lalb_Chr21g0314871 Lupinus albus HOM05D006467 ORTHO05D008012 1.3e-23 113.2 113 54.0
QL07p044433 Quercus lobata HOM05D006467 ORTHO05D008012 1.3e-23 113.2 111 53.2
CANSAT80G0273 Cannabis sativa HOM05D006467 ORTHO05D008012 1.7e-23 112.8 111 54.1
A03p20520 Brassica napus HOM05D006467 ORTHO05D008012 2.2e-23 112.5 112 52.7
BraA03t11294Z Brassica rapa HOM05D006467 ORTHO05D008012 2.2e-23 112.5 112 52.7
THA.LOC104823447 Tarenaya hassleriana HOM05D006467 ORTHO05D008012 2.2e-23 112.5 109 52.3
Atru.chr8.1867 Acer truncatum HOM05D006467 ORTHO05D008012 2.9e-23 112.1 112 50.0
Gohir.D09G145300 Gossypium hirsutum HOM05D006467 ORTHO05D008012 2.9e-23 112.1 115 53.0
Sp4g19510 Schrenkiella parvula HOM05D006467 ORTHO05D008012 3.8e-23 111.7 112 52.7
AT2G37195 Arabidopsis thaliana HOM05D006467 ORTHO05D008012 5.0e-23 111.3 112 53.6
BcaC01g06644 Brassica carinata HOM05D006467 ORTHO05D008012 5.0e-23 111.3 112 51.8
C03p24120 Brassica napus HOM05D006467 ORTHO05D008012 5.0e-23 111.3 112 51.8
Ah.15g092380 Amaranthus hybridus HOM05D006467 ORTHO05D008012 1.1e-22 110.2 111 50.5
Carub.0004s1909 Capsella rubella HOM05D006467 ORTHO05D008012 1.1e-22 110.2 112 53.6
AUR62033514 Chenopodium quinoa HOM05D006467 ORTHO05D008012 1.1e-22 110.2 111 52.3
Potri.006G127800 Populus trichocarpa HOM05D006467 ORTHO05D008012 1.1e-22 110.2 109 50.5
AL4G33560 Arabidopsis lyrata HOM05D006467 ORTHO05D008012 1.9e-22 109.4 112 53.6
BolC3t14804H Brassica oleracea HOM05D006467 ORTHO05D008012 2.5e-22 109.0 113 52.2
AUR62028561 Chenopodium quinoa HOM05D006467 ORTHO05D008012 3.2e-22 108.6 111 51.4
Phvul.007G220100 Phaseolus vulgaris HOM05D006467 ORTHO05D008012 3.2e-22 108.6 115 48.7
Thhalv10017389m.g Eutrema salsugineum HOM05D006467 ORTHO05D008012 5.5e-22 107.8 112 51.8
Gorai.009G417600 Gossypium raimondii HOM05D006467 ORTHO05D008012 9.3e-22 107.1 122 50.8
arahy.Tifrunner.gnm1.ann1.HNS49Q Arachis hypogaea HOM05D006467 ORTHO05D008012 1.2e-21 106.7 112 50.0
arahy.Tifrunner.gnm1.ann1.RH0WXQ Arachis hypogaea HOM05D006467 ORTHO05D008012 1.2e-21 106.7 112 50.0
arahy.Tifrunner.gnm1.ann1.VPUZ6C Arachis hypogaea HOM05D006467 ORTHO05D008012 1.2e-21 106.7 112 50.0
PGR142G2369 Punica granatum HOM05D006467 ORTHO05D008012 1.6e-21 106.3 114 48.2
COL.COLO4_27023 Corchorus olitorius HOM05D006467 ORTHO05D008012 2.1e-21 105.9 133 45.9
Gohir.A09G149400 Gossypium hirsutum HOM05D006467 ORTHO05D008012 2.1e-21 105.9 110 51.8
Nn2g10804 Nelumbo nucifera HOM05D006467 ORTHO05D008012 2.1e-21 105.9 114 46.5
Duzib128G1557 Durio zibethinus HOM05D006467 ORTHO05D008012 2.7e-21 105.5 110 51.8
Sabra16G0095600 Salix brachista HOM05D006467 ORTHO05D008012 4.6e-21 104.8 126 46.8
MELO3C009340.2 Cucumis melo HOM05D006467 ORTHO05D008012 7.9e-21 104.0 110 49.1
Aa31LG5G22520 Aethionema arabicum HOM05D006467 ORTHO05D008012 1.0e-20 103.6 112 48.2
CARHR131710 Cardamine hirsuta HOM05D006467 ORTHO05D008012 1.0e-20 103.6 104 52.9
vmacro20032 Vaccinium macrocarpon HOM05D006467 ORTHO05D008012 1.3e-20 103.2 143 44.1
CsaV3_3G035800 Cucumis sativus L. HOM05D006467 ORTHO05D008012 1.8e-20 102.8 110 49.1
Gorai.006G166500 Gossypium raimondii HOM05D006467 ORTHO05D008012 3.0e-20 102.1 130 46.9
TWI77G0724 Tripterygium wilfordii HOM05D006467 ORTHO05D008012 8.7e-20 100.5 111 46.8
ClCG10G020300 Citrullus lanatus HOM05D006467 ORTHO05D008012 1.1e-19 100.1 110 47.3
Sed0017827 Sechium edule HOM05D006467 ORTHO05D008012 2.5e-19 99.0 110 48.2
MBI07_g19293_MAGBIO Magnolia biondii HOM05D006467 ORTHO05D008012 4.3e-19 98.2 115 46.1
Gohir.D04G113200 Gossypium hirsutum HOM05D006467 ORTHO05D008012 9.0e-17 90.5 87 54.0
DCAR_009295 Daucus carota HOM05D006467 ORTHO05D008012 3.8e-15 85.1 64 60.9
Eucgr.K03249 Eucalyptus grandis HOM05D006467 ORTHO05D008012 6.5e-15 84.3 88 47.7
Dinv37285 Davidia involucrata HOM05D006467 ORTHO05D008012 8.5e-15 84.0 67 58.2
Psat6g070840 Pisum sativum HOM05D006467 ORTHO05D008012 2.5e-14 82.4 65 56.9
Sabra06G0100500 Salix brachista HOM05D006467 ORTHO05D008012 1.2e-13 80.1 149 36.2
FvH4_1g27957 Fragaria vesca HOM05D000871 ORTHO05D008012 7.9e-13 77.4 81 56.8
Haze_20589 Corylus avellana HOM05D006467 ORTHO05D008012 1.0e-12 77.0 75 45.3
Hund20246 Selenicereus undatus HOM05D006467 ORTHO05D008012 1.8e-12 76.3 65 52.3
unitig_27.g25371 Utricularia gibba HOM05D006467 ORTHO05D008012 2.3e-12 75.9 91 41.8
HPP92_022407 Vanilla planifolia HOM05D006467 ORTHO05D008012 8.8e-12 73.9 110 40.9
HPP92_027503 Vanilla planifolia HOM05D006467 ORTHO05D008012 1.5e-11 73.2 110 40.9
Zm00001eb191980 Zea mays HOM05D006467 ORTHO05D008012 2.2e-10 69.3 114 40.4
Zm00001eb258270 Zea mays HOM05D006467 ORTHO05D008012 4.8e-10 68.2 114 40.4
FvH4_1g28030 Fragaria vesca HOM05D000871 ORTHO05D008012 2.4e-09 65.9 61 59.0
C07p17010 Brassica napus HOM05D006467 ORTHO05D008012 3.1e-09 65.5 91 46.2
BcaC03g13318 Brassica carinata HOM05D006467 ORTHO05D008012 4.1e-09 65.1 97 43.3
BcaC03g13319 Brassica carinata HOM05D006467 ORTHO05D008012 4.1e-09 65.1 97 43.3
C02p04540 Brassica napus HOM05D006467 ORTHO05D008012 1.5e-08 63.2 91 45.1
BolC1t01590H Brassica oleracea HOM05D006467 ORTHO05D008012 3.4e-08 62.0 91 45.1
ATR0048G054 Amborella trichopoda HOM05D006467 ORTHO05D008012 5.9e-08 61.2 67 40.3
Os02g0805700 Oryza sativa ssp. japonica HOM05D006467 ORTHO05D008012 1.3e-07 60.1 104 39.4
C06p12980 Brassica napus HOM05D006467 ORTHO05D008012 2.9e-07 58.9 97 43.3
Actinidia40026 Actinidia chinensis HOM05D006467 ORTHO05D008012 1.9e-06 56.2 63 52.4


User provided reference genes

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