Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 1.8e-191 672.5 362 100.0
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 2.2e-48 197.2 337 45.1
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.4e-47 193.7 361 42.1
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 2.0e-46 190.7 371 44.7
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 4.5e-46 189.5 349 44.7
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.7e-45 187.6 351 43.9
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.7e-45 187.6 345 45.5
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.9e-44 184.1 358 40.8
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 7.2e-44 182.2 343 42.3
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.6e-43 181.0 363 44.1
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 4.7e-43 179.5 348 42.5
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 2.3e-42 177.2 340 41.5
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 2.3e-42 177.2 364 40.4
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 3.9e-42 176.4 355 40.3
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 5.2e-42 176.0 353 42.8
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 8.8e-42 175.3 347 41.8
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.1e-41 174.9 366 41.5
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 1.5e-41 174.5 357 42.9
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 1.5e-41 174.5 356 41.9
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 2.6e-41 173.7 331 42.0
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.8e-40 169.5 348 42.5
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 6.3e-40 169.1 366 39.9
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.1e-39 168.3 376 39.4
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.1e-39 168.3 360 40.8
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.8e-39 167.5 374 40.1
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 7.0e-39 165.6 396 40.2
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.2e-38 164.9 360 40.0
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 3.5e-38 163.3 349 41.3
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 3.5e-38 163.3 360 40.0
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.5e-38 162.9 349 41.3
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 5.9e-38 162.5 362 39.5
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 7.7e-38 162.2 368 38.6
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.0e-37 161.8 350 41.1
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.9e-37 160.2 361 38.2
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 3.8e-37 159.8 336 39.9
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 5.0e-37 159.5 342 38.0
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 6.5e-37 159.1 333 38.1
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.1e-36 158.3 368 40.2
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.1e-36 158.3 367 39.8
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 1.5e-36 157.9 352 38.1
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 2.5e-36 157.1 356 39.6
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 2.5e-36 157.1 364 39.6
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.2e-36 156.4 351 38.2
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 5.5e-36 156.0 281 44.1
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 7.2e-36 155.6 347 40.1
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 9.4e-36 155.2 336 38.4
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.2e-35 154.8 370 38.9
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.2e-35 154.8 350 41.4
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 1.2e-35 154.8 370 38.9
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.6e-35 154.5 376 38.8
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 6.1e-35 152.5 377 37.1
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 1.4e-34 151.4 362 37.8
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.0e-34 149.8 362 38.1
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 5.2e-34 149.4 368 39.9
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.5e-33 147.9 367 38.4
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.5e-33 147.9 382 38.0
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 2.0e-33 147.5 357 36.7
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 2.0e-33 147.5 345 39.1
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 7.5e-33 145.6 443 35.4
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 9.7e-33 145.2 341 39.9
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.2e-32 144.1 367 39.5
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 2.8e-32 143.7 363 39.1
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 3.7e-32 143.3 354 38.7
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.8e-32 142.9 367 39.2
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 8.2e-32 142.1 336 38.1
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.4e-31 141.4 341 39.3
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 2.4e-31 140.6 378 38.1
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 9.1e-31 138.7 246 44.7
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 9.1e-31 138.7 246 44.7
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 9.1e-31 138.7 246 44.7
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 9.1e-31 138.7 246 44.7
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.2e-30 138.3 335 43.0
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 1.2e-30 138.3 374 36.1
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.2e-30 138.3 363 36.6
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 3.5e-30 136.7 347 38.0
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 5.9e-30 136.0 253 42.7
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 5.9e-30 136.0 253 42.7
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 1.0e-29 135.2 246 43.9
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 2.2e-29 134.0 359 37.9
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 5.0e-29 132.9 343 39.4
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.5e-28 131.3 342 38.0
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 1.9e-28 131.0 347 36.6
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 1.9e-28 131.0 334 38.0
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.4e-26 124.8 227 45.4
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 2.3e-26 124.0 332 36.7
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 3.0e-26 123.6 349 37.8
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 4.0e-26 123.2 359 40.4
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 5.2e-26 122.9 338 34.6
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 7.5e-25 119.0 352 36.6
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 2.8e-24 117.1 353 34.6
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 4.8e-24 116.3 331 35.0
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 4.1e-23 113.2 367 32.7
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 5.4e-23 112.8 334 36.5
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 5.4e-23 112.8 256 39.1
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 1.6e-22 111.3 320 36.2
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 7.7e-22 109.0 343 34.1
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 3.8e-21 106.7 230 40.4
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-20 105.1 230 39.6
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.5e-20 102.8 165 48.5
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.1e-19 100.9 337 32.6
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 2.1e-19 100.9 222 40.5
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 4.7e-19 99.8 350 32.0
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 8.0e-19 99.0 339 31.9
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.8e-18 97.8 349 33.2
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 3.0e-18 97.1 258 34.9
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 4.0e-18 96.7 220 40.0
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 8.9e-18 95.5 84 66.7
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 1.5e-17 94.7 224 39.7
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 2.0e-17 94.4 340 32.4
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 2.0e-17 94.4 327 34.9
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 4.4e-17 93.2 335 33.1
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 3.7e-16 90.1 335 32.8
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 8.3e-16 89.0 335 32.8
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 8.3e-16 89.0 335 32.8
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 1.1e-15 88.6 363 32.2
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.1e-15 88.6 314 32.2
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.8e-15 87.8 239 36.0
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 1.8e-15 87.8 324 30.2
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 2.4e-15 87.4 331 36.3
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.1e-15 87.0 138 43.5
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 3.1e-15 87.0 337 30.9
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.1e-15 87.0 343 31.2
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 5.4e-15 86.3 333 30.6
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 7.0e-15 85.9 337 32.0
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 7.0e-15 85.9 337 31.8
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 9.2e-15 85.5 351 31.9
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 1.6e-14 84.7 337 30.3
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 1.6e-14 84.7 83 63.9
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 2.0e-14 84.3 338 33.1
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 5.0e-13 79.7 340 30.0
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 6.6e-13 79.3 340 30.0
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 8.6e-13 79.0 340 30.6
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.5e-12 78.2 339 31.9
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.5e-12 78.2 111 52.3
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.9e-12 77.8 355 29.0
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.9e-12 77.8 363 30.9
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 2.5e-12 77.4 340 30.9
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 2.5e-12 77.4 337 29.7
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 2.5e-12 77.4 311 32.2
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.2e-11 75.1 335 31.9
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.6e-11 74.7 344 30.8
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 8.0e-11 72.4 348 30.5
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 8.0e-11 72.4 348 30.5
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.0e-10 72.0 325 31.4
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 2.3e-10 70.9 338 29.0
DCAR_009279 Daucus carota HOM05D004499 ORTHO05D004928 6.8e-10 69.3 192 38.0
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 6.8e-10 69.3 242 34.7
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 2.0e-09 67.8 170 35.9
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.4e-09 67.0 95 41.1
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.8e-09 66.2 212 34.4
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 5.8e-09 66.2 413 29.8
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 1.3e-08 65.1 311 32.2
MBI05_g41566_MAGBIO Magnolia biondii HOM05D060308 ORTHO05D004928 2.9e-08 63.9 148 34.5
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.4e-07 61.6 279 32.3
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 2.4e-07 60.8 303 27.1
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 1.6e-06 58.2 353 27.5
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 2.7e-06 57.4 253 31.2
Zm00001eb265390 Zea mays HOM05D004499 ORTHO05D004928 2.7e-06 57.4 247 34.8
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 3.5e-06 57.0 297 29.3


User provided reference genes

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