Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 0.0e+00 1437.9 854 100.0
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 2.1e-203 713.4 855 61.2
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 5.4e-199 698.7 855 58.9
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 7.8e-198 694.9 864 60.3
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 8.6e-197 691.4 859 59.8
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 7.3e-196 688.3 818 62.6
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 7.5e-193 678.3 862 58.9
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 1.3e-192 677.6 862 58.9
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 7.1e-191 671.8 849 53.0
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.0e-189 667.9 880 52.2
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 1.0e-189 667.9 860 59.2
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 9.5e-188 661.4 823 60.1
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 2.1e-187 660.2 815 60.0
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 2.8e-187 659.8 849 58.7
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 8.1e-187 658.3 873 59.5
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 4.0e-186 656.0 874 56.8
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 6.8e-186 655.2 810 60.2
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 3.4e-185 652.9 808 59.5
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 7.6e-185 651.7 859 57.6
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 1.7e-184 650.6 760 62.8
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.7e-184 650.6 864 57.5
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 4.9e-184 649.0 874 56.5
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 1.1e-180 637.9 848 57.8
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 1.2e-179 634.4 871 55.8
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 1.8e-178 630.6 803 59.8
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 3.4e-177 626.3 861 56.1
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 7.6e-177 625.2 817 57.8
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 4.9e-176 622.5 869 56.0
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 2.4e-175 620.2 863 54.8
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 2.7e-174 616.7 854 56.1
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 1.5e-172 610.9 813 58.3
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 2.8e-171 606.7 849 55.8
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 1.1e-170 604.7 858 54.2
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 4.9e-168 595.9 763 58.6
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 4.9e-168 595.9 862 55.3
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 1.1e-167 594.7 851 54.1
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 2.4e-167 593.6 858 55.1
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 1.2e-166 591.3 817 57.9
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 2.1e-166 590.5 810 57.2
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 7.9e-166 588.6 696 63.4
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 5.1e-165 585.9 834 51.7
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 8.7e-165 585.1 810 56.4
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.5e-164 584.3 785 51.5
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 1.9e-164 583.9 875 53.5
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 3.3e-164 583.2 879 53.2
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 2.1e-163 580.5 869 52.8
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 2.1e-163 580.5 854 54.4
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 3.7e-163 579.7 838 55.6
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 1.1e-162 578.2 790 57.5
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 5.3e-162 575.9 874 53.1
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 6.9e-162 575.5 869 53.2
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 6.9e-162 575.5 869 53.2
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 6.9e-162 575.5 856 54.0
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 9.0e-162 575.1 874 52.5
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 9.0e-162 575.1 860 52.3
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 9.0e-162 575.1 860 52.3
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 4.5e-161 572.8 750 57.2
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 1.3e-160 571.2 881 47.0
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 1.2e-158 564.7 796 55.3
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 8.7e-157 558.5 789 50.1
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 2.5e-156 557.0 783 55.3
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 4.3e-156 556.2 791 53.7
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 8.2e-155 552.0 878 45.4
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 1.1e-154 551.6 864 53.2
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 5.8e-153 545.8 743 55.3
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 6.5e-152 542.3 737 59.4
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 3.2e-151 540.0 854 52.0
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 1.6e-150 537.7 748 57.4
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 6.0e-150 535.8 705 58.3
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 1.3e-149 534.6 746 55.1
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 3.9e-149 533.1 793 47.9
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 6.7e-149 532.3 793 47.8
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 6.7e-149 532.3 766 54.3
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 1.5e-148 531.2 868 51.7
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 2.1e-147 527.3 763 56.2
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 6.3e-147 525.8 775 53.9
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 2.4e-146 523.9 798 55.3
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 5.3e-146 522.7 798 55.4
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 2.6e-145 520.4 843 44.7
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 2.6e-145 520.4 799 55.6
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 1.2e-142 511.5 827 52.6
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 1.6e-142 511.1 847 45.2
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 4.6e-134 483.0 779 51.5
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 8.5e-128 462.2 785 38.1
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 4.1e-122 443.4 823 41.2
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 5.5e-119 433.0 591 61.4
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 2.0e-113 414.5 799 47.4
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 2.4e-106 391.0 801 45.4
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 2.0e-97 361.3 346 70.2
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 1.4e-90 338.6 530 59.6
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 1.8e-90 338.2 554 49.1
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 1.5e-79 302.0 661 33.3
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 5.8e-76 290.0 405 63.7
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.1e-71 275.8 789 41.7
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 2.5e-71 274.6 535 53.6
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 7.8e-65 253.1 826 39.8
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 7.3e-63 246.5 729 41.2
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 9.3e-58 229.6 265 46.8
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 1.1e-55 222.6 225 53.8
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 4.8e-46 190.7 225 49.8
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 4.9e-43 180.6 313 50.5
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 4.9e-43 180.6 503 34.6
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 5.7e-31 140.6 182 45.1
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 9.7e-23 113.2 138 47.8
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 6.9e-21 107.1 167 40.1
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 7.2e-18 97.1 105 47.6
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 1.3e-14 86.3 74 58.1
PRCOL_00006441 Prasinoderma coloniale HOM05D007104 ORTHO05D008851 4.2e-10 71.2 247 25.9
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 3.6e-09 68.2 178 54.5


User provided reference genes

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