Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 6.0e-153 544.3 300 100.0
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 6.0e-44 182.2 302 46.0
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 6.2e-41 172.2 311 45.0
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.0e-40 169.5 301 45.2
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 5.8e-39 165.6 301 43.9
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 7.5e-39 165.2 301 43.9
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 9.2e-37 158.3 300 41.7
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 7.3e-34 148.7 301 41.2
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 9.5e-34 148.3 302 42.7
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 1.6e-33 147.5 304 42.1
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 1.1e-32 144.8 300 40.7
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 6.8e-32 142.1 317 39.7
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.2e-31 141.4 300 41.3
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.2e-31 141.4 301 38.9
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 5.8e-31 139.0 340 37.9
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 1.3e-30 137.9 307 39.7
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.7e-30 137.5 302 38.7
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 2.2e-30 137.1 299 39.1
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 3.8e-30 136.3 314 40.4
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.4e-29 134.4 302 38.4
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 5.4e-29 132.5 305 37.7
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 7.1e-29 132.1 305 38.0
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 2.7e-28 130.2 300 39.7
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 2.7e-28 130.2 299 35.5
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 4.6e-28 129.4 319 41.1
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 7.3e-26 122.1 266 41.4
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 1.6e-25 120.9 303 37.6
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 2.1e-25 120.6 300 38.7
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 2.8e-25 120.2 299 35.5
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 8.1e-25 118.6 301 36.9
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 1.4e-24 117.9 299 36.8
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 6.9e-24 115.5 303 36.6
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 6.9e-24 115.5 299 36.1
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.8e-23 112.5 299 34.8
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 7.6e-23 112.1 301 35.9
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 1.7e-22 110.9 265 39.2
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.7e-22 110.9 300 35.0
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.2e-22 110.5 302 34.4
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.4e-21 107.1 300 33.7
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.4e-21 105.9 297 32.7
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 7.1e-21 105.5 299 33.8
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 9.3e-21 105.1 299 36.1
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 9.3e-21 105.1 302 34.1
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.2e-20 104.8 302 32.5
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.6e-20 104.4 297 32.7
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 2.7e-20 103.6 297 34.0
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 3.5e-20 103.2 303 33.7
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.5e-20 103.2 297 32.7
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.3e-19 101.3 258 38.8
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.7e-19 100.9 298 33.9
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 3.0e-19 100.1 303 31.4
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 3.9e-19 99.8 287 35.9
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 1.1e-18 98.2 155 47.7
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 2.5e-18 97.1 263 36.1
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.5e-18 97.1 301 32.6
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 7.3e-18 95.5 303 36.3
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 9.6e-18 95.1 301 34.6
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.3e-17 94.7 297 31.6
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 1.6e-17 94.4 299 31.8
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 1.6e-17 94.4 136 47.1
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 2.1e-17 94.0 290 31.4
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.1e-17 94.0 348 31.9
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 3.6e-17 93.2 147 47.6
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 3.6e-17 93.2 147 47.6
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 3.6e-17 93.2 147 47.6
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 3.6e-17 93.2 302 33.8
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.8e-17 92.8 111 53.2
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 6.2e-17 92.4 104 53.8
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 1.1e-16 91.7 297 33.0
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 4.0e-16 89.7 302 31.8
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 9.0e-16 88.6 158 39.9
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 1.2e-15 88.2 125 48.0
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 2.0e-15 87.4 305 32.1
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 2.6e-15 87.0 125 48.0
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.6e-15 87.0 182 41.2
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 4.5e-15 86.3 294 32.7
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 5.8e-15 85.9 150 43.3
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 5.8e-15 85.9 82 59.8
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 7.6e-15 85.5 296 30.7
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 7.6e-15 85.5 256 35.9
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.3e-14 84.7 168 39.3
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 2.2e-14 84.0 304 31.2
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 4.9e-14 82.8 149 38.9
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 6.4e-14 82.4 158 41.1
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 8.4e-14 82.0 189 40.7
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.1e-13 81.6 300 33.7
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 1.4e-13 81.3 150 42.0
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 1.4e-13 81.3 295 30.8
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 1.9e-13 80.9 100 52.0
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 2.4e-13 80.5 180 39.4
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.4e-13 80.5 178 41.6
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 4.2e-13 79.7 133 45.1
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 4.2e-13 79.7 311 29.9
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 4.2e-13 79.7 173 38.7
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 5.4e-13 79.3 305 32.8
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 7.1e-13 79.0 162 40.1
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 1.2e-12 78.2 69 60.9
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 1.6e-12 77.8 151 41.1
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.7e-12 77.0 152 42.8
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 2.7e-12 77.0 146 41.1
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 3.5e-12 76.6 67 61.2
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 3.5e-12 76.6 67 61.2
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 3.5e-12 76.6 297 30.6
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 4.6e-12 76.3 292 28.1
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 7.9e-12 75.5 61 65.6
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 1.0e-11 75.1 147 38.8
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 1.0e-11 75.1 310 31.0
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 1.8e-11 74.3 75 60.0
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.3e-11 73.9 182 37.9
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 2.3e-11 73.9 108 49.1
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.9e-10 70.9 61 62.3
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 1.9e-10 70.9 162 37.0
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.9e-10 70.9 107 46.7
PGSC0003DMG400002023 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.9e-10 70.9 80 55.0
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 4.3e-10 69.7 166 36.7
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 7.4e-10 68.9 136 39.7
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 9.6e-10 68.6 309 30.1
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 9.6e-10 68.6 101 47.5
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.3e-09 68.2 297 30.0
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 2.1e-09 67.4 113 43.4
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 2.8e-09 67.0 150 40.0
PGSC0003DMG400018718 Solanum tuberosum HOM05D004973 ORTHO05D006119 2.8e-09 67.0 80 53.8
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 2.4e-08 63.9 62 56.5
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 3.4e-07 60.1 87 48.3
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 5.8e-07 59.3 80 43.8
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 5.8e-07 59.3 293 28.3
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 5.8e-07 59.3 95 47.4
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 5.8e-07 59.3 299 28.8
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 7.6e-07 58.9 154 36.4
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 7.6e-07 58.9 293 28.0
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 9.9e-07 58.5 153 35.3
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 9.9e-07 58.5 223 31.4
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 1.3e-06 58.2 82 47.6
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 1.7e-06 57.8 79 45.6
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 6.4e-06 55.8 278 30.2


User provided reference genes

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