Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 8.1e-277 956.4 481 100.0
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 2.9e-109 399.8 373 55.5
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 5.5e-108 395.6 357 54.6
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 7.2e-108 395.2 383 54.3
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 4.7e-107 392.5 376 53.7
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 6.1e-107 392.1 387 51.7
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 1.0e-106 391.3 406 51.7
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.4e-106 391.0 383 52.5
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 3.0e-106 389.8 369 53.7
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 3.9e-106 389.4 381 53.5
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 8.8e-106 388.3 366 52.7
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 8.8e-106 388.3 374 53.2
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 8.8e-106 388.3 400 52.8
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 1.1e-105 387.9 374 54.0
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 2.0e-105 387.1 374 54.3
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 2.0e-105 387.1 374 53.7
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 2.0e-105 387.1 374 53.7
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 3.3e-105 386.3 417 49.6
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 3.3e-105 386.3 412 50.7
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 4.4e-105 386.0 376 52.9
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 4.4e-105 386.0 355 54.1
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 4.4e-105 386.0 380 52.9
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 4.4e-105 386.0 380 53.2
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 5.7e-105 385.6 377 53.3
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 7.4e-105 385.2 381 52.8
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 7.4e-105 385.2 400 51.8
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 9.7e-105 384.8 377 52.8
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 9.7e-105 384.8 385 51.9
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 9.7e-105 384.8 376 53.7
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 1.3e-104 384.4 351 54.7
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 1.3e-104 384.4 401 49.4
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.7e-104 384.0 361 52.9
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 2.2e-104 383.6 395 51.6
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 2.2e-104 383.6 380 52.9
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 2.8e-104 383.3 376 52.4
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 3.7e-104 382.9 411 51.3
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 3.7e-104 382.9 383 52.5
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 3.7e-104 382.9 357 53.2
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 4.8e-104 382.5 381 52.5
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 4.8e-104 382.5 370 53.5
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 6.3e-104 382.1 381 52.5
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 6.3e-104 382.1 381 52.5
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 6.3e-104 382.1 383 52.0
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 8.2e-104 381.7 380 52.6
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.1e-103 381.3 376 52.9
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 1.8e-103 380.6 388 52.8
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 1.8e-103 380.6 384 51.8
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 1.8e-103 380.6 385 51.4
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 2.4e-103 380.2 382 52.9
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 2.4e-103 380.2 371 52.8
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 2.4e-103 380.2 395 50.9
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 2.4e-103 380.2 375 51.7
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 3.1e-103 379.8 362 53.3
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 3.1e-103 379.8 381 49.3
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 4.1e-103 379.4 381 52.0
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 4.1e-103 379.4 367 54.0
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 4.1e-103 379.4 378 51.6
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 5.3e-103 379.0 411 49.4
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 5.3e-103 379.0 373 51.7
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 5.3e-103 379.0 408 50.0
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 5.3e-103 379.0 413 49.2
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 7.0e-103 378.6 382 51.6
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 7.0e-103 378.6 379 51.2
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 7.0e-103 378.6 380 52.1
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 9.1e-103 378.3 385 51.2
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 9.1e-103 378.3 370 53.0
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 9.1e-103 378.3 395 50.9
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 9.1e-103 378.3 392 50.5
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.2e-102 377.9 380 51.6
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 1.2e-102 377.9 370 52.7
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.2e-102 377.9 370 52.7
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 1.2e-102 377.9 399 50.9
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.5e-102 377.5 380 51.3
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 1.5e-102 377.5 383 51.7
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.5e-102 377.5 396 50.5
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 1.5e-102 377.5 376 51.1
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 2.0e-102 377.1 370 52.7
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.6e-102 376.7 423 48.2
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 3.5e-102 376.3 394 51.5
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 3.5e-102 376.3 370 53.0
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 3.5e-102 376.3 419 49.4
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 4.5e-102 375.9 379 52.2
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 4.5e-102 375.9 376 52.4
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 4.5e-102 375.9 367 52.6
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.3e-101 374.4 379 51.5
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.7e-101 374.0 380 51.6
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 2.9e-101 373.2 366 53.0
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 3.8e-101 372.9 366 51.9
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 3.8e-101 372.9 376 50.8
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 3.8e-101 372.9 403 47.9
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 6.5e-101 372.1 366 52.5
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 6.5e-101 372.1 379 51.2
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 6.5e-101 372.1 405 50.1
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 6.5e-101 372.1 372 51.9
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 6.5e-101 372.1 372 51.9
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 8.5e-101 371.7 380 51.3
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 2.5e-100 370.2 368 53.3
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 3.2e-100 369.8 422 48.8
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 4.2e-100 369.4 366 52.2
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 5.5e-100 369.0 375 51.2
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 5.5e-100 369.0 398 50.0
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 5.5e-100 369.0 375 51.2
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 9.4e-100 368.2 385 50.4
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 1.2e-99 367.9 365 51.8
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 1.2e-99 367.9 364 53.0
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 1.2e-99 367.9 367 51.8
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 2.7e-99 366.7 379 50.7
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 4.7e-99 365.9 379 50.1
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 8.0e-99 365.2 342 53.8
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 1.0e-98 364.8 373 52.0
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 1.8e-98 364.0 369 52.6
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 3.9e-98 362.8 380 51.3
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 5.2e-98 362.5 370 49.5
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 6.7e-98 362.1 370 52.2
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 8.8e-98 361.7 314 56.4
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 1.1e-97 361.3 380 49.2
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 1.5e-97 360.9 379 50.1
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.5e-97 360.9 357 51.3
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 2.0e-97 360.5 370 52.2
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 2.6e-97 360.1 351 51.6
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 4.8e-96 355.9 389 48.8
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 1.4e-95 354.4 369 51.5
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 1.8e-95 354.0 387 48.8
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 1.8e-95 354.0 425 45.2
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 2.6e-94 350.1 362 50.3
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 2.6e-94 350.1 376 48.7
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 1.7e-93 347.4 404 47.8
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 5.0e-93 345.9 317 52.7
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 1.5e-92 344.4 393 48.9
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 1.9e-92 344.0 418 44.5
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 2.5e-92 343.6 361 49.9
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 5.5e-92 342.4 393 48.6
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 7.2e-92 342.0 393 48.6
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 1.6e-91 340.9 311 55.0
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 8.0e-91 338.6 393 48.3
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.5e-89 334.3 427 45.0
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 3.4e-89 333.2 397 45.3
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 1.3e-88 331.3 312 51.3
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 1.1e-87 328.2 397 44.6
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 3.1e-87 326.6 353 47.3
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.1e-87 326.6 353 47.3
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 5.4e-87 325.9 398 44.5
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 1.7e-85 320.9 397 44.3
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 1.6e-83 314.3 328 47.6
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 2.6e-81 307.0 333 50.2
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 3.7e-80 303.1 339 47.2
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 1.4e-79 301.2 319 51.1
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 5.2e-74 282.7 268 50.4
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 6.4e-72 275.8 364 42.0
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 2.7e-70 270.4 219 58.4
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.3e-69 268.1 238 55.9
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 6.4e-64 249.2 236 54.7
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.3e-61 241.5 354 39.5
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 6.4e-56 222.6 376 35.9
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.8e-51 207.2 354 36.7
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 6.8e-50 202.6 216 50.0
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 4.4e-49 199.9 169 57.4
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 1.3e-48 198.4 213 47.4
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 6.4e-48 196.1 213 46.9
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 1.9e-47 194.5 158 57.6
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 2.4e-47 194.1 169 55.6
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 1.2e-46 191.8 169 55.0
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 2.7e-46 190.7 169 54.4
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 4.6e-46 189.9 154 57.1
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 1.2e-43 181.8 192 48.4
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 1.2e-43 181.8 167 53.9
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 1.8e-42 177.9 165 54.5
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 3.1e-42 177.2 213 45.5
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 3.1e-42 177.2 140 57.9
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 3.1e-42 177.2 422 30.1
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 1.5e-41 174.9 192 47.9
Dinv37234 Davidia involucrata HOM05D002855 ORTHO05D029235 2.1e-38 164.5 201 45.8
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 2.1e-38 164.5 141 57.4
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 2.1e-38 164.5 141 57.4
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 1.7e-37 161.4 101 72.3
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 3.0e-37 160.6 221 40.3
Hma1.2p1_0111F.1_g053510 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 4.4e-33 146.7 186 44.1
A06p21220 Brassica napus HOM05D002855 ORTHO05D004406 5.6e-28 129.8 213 38.0
Hma1.2p1_0111F.1_g053470 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 1.6e-27 128.3 177 41.2
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 1.4e-23 115.2 72 66.7
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 2.7e-22 110.9 130 47.7
Lj3P975T65 Lonicera japonica HOM05D002855 ORTHO05D029235 6.7e-21 106.3 141 39.7
vmacro14495 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.1e-15 89.0 133 42.9
unitig_736.g22426 Utricularia gibba HOM05D002855 ORTHO05D004406 6.0e-14 83.2 124 39.5
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 8.7e-13 79.3 95 37.9


User provided reference genes

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