Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 2.8e-123 445.3 221 100.0
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 5.5e-79 298.1 225 64.4
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 9.1e-74 280.8 224 60.7
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 2.6e-73 279.3 224 62.1
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 2.6e-73 279.3 224 62.1
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 1.9e-71 273.1 227 61.2
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 2.3e-69 266.2 224 58.9
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 6.3e-67 258.1 222 57.2
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 8.2e-67 257.7 222 59.0
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 1.8e-66 256.5 224 56.2
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 6.5e-64 248.1 226 55.8
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 1.8e-61 240.0 194 59.8
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 1.5e-60 236.9 222 53.6
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 1.5e-60 236.9 225 55.1
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 3.3e-60 235.7 206 56.8
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 1.7e-59 233.4 220 53.2
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 3.7e-59 232.3 231 51.9
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 3.1e-58 229.2 224 50.0
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 2.0e-57 226.5 228 54.4
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 2.0e-57 226.5 225 53.3
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 5.9e-57 224.9 225 54.2
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 7.7e-57 224.6 228 50.0
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 2.2e-56 223.0 229 51.5
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 3.8e-56 222.2 235 50.2
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 3.8e-56 222.2 216 49.1
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 3.8e-56 222.2 225 52.9
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 3.2e-55 219.2 193 56.0
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 7.2e-55 218.0 232 47.4
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 1.6e-54 216.9 235 48.9
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 1.6e-54 216.9 232 50.4
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 2.1e-54 216.5 216 53.7
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 2.7e-54 216.1 225 51.1
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 8.0e-54 214.5 223 53.4
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 1.2e-52 210.7 228 50.0
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 2.6e-52 209.5 253 44.3
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 8.3e-51 204.5 233 46.8
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 1.8e-50 203.4 230 46.5
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 2.4e-50 203.0 248 46.0
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 4.1e-50 202.2 229 46.3
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 7.0e-50 201.4 230 46.1
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 9.1e-50 201.1 228 45.2
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 2.7e-49 199.5 225 48.9
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 1.7e-48 196.8 195 51.3
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 2.2e-48 196.4 216 47.7
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 1.5e-47 193.7 193 50.8
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 3.2e-47 192.6 225 44.9
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 7.2e-47 191.4 230 44.8
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 2.1e-46 189.9 199 46.2
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.1e-46 189.9 239 45.2
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 2.7e-46 189.5 239 45.2
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 6.1e-46 188.3 196 46.9
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 1.0e-45 187.6 196 46.9
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.8e-45 186.8 239 44.8
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 2.3e-45 186.4 211 45.5
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 3.0e-45 186.0 196 46.9
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.5e-44 183.7 207 47.3
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 2.0e-44 183.3 224 44.2
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 2.6e-44 183.0 166 52.4
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 1.3e-43 180.6 200 47.0
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.2e-43 179.9 239 43.5
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 2.8e-43 179.5 201 44.8
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 2.8e-43 179.5 202 45.0
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 1.8e-42 176.8 220 44.5
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 4.1e-42 175.6 223 42.2
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 1.2e-41 174.1 319 35.7
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 2.0e-41 173.3 226 42.0
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 2.7e-41 172.9 186 45.2
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 2.7e-41 172.9 195 46.2
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 4.5e-41 172.2 223 40.4
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 7.7e-41 171.4 195 44.1
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 1.0e-40 171.0 195 44.1
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 1.3e-40 170.6 235 40.9
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 6.6e-40 168.3 186 44.6
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 1.9e-39 166.8 146 54.8
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 5.6e-39 165.2 236 39.0
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 5.6e-39 165.2 237 38.8
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 1.2e-38 164.1 229 40.6
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 1.2e-38 164.1 238 39.1
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 1.2e-38 164.1 237 38.8
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 1.2e-38 164.1 232 41.4
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 2.8e-38 162.9 228 39.5
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 3.6e-38 162.5 236 38.1
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 4.7e-38 162.2 178 46.1
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 6.1e-38 161.8 229 39.7
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 1.0e-37 161.0 237 38.0
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 1.7e-35 153.7 256 37.1
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 2.9e-35 152.9 196 39.8
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 4.1e-34 149.1 149 56.4
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 1.6e-33 147.1 169 43.8
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 3.5e-33 146.0 195 40.0
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 9.5e-31 137.9 208 35.6
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 1.6e-25 120.6 229 35.4
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 1.0e-24 117.9 80 66.2
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 9.5e-23 111.3 116 47.4
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 3.7e-19 99.4 180 37.8
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 4.9e-19 99.0 114 43.9
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 4.9e-19 99.0 121 39.7
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 1.1e-18 97.8 123 40.7
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 1.2e-17 94.4 159 35.2
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 3.9e-16 89.4 61 67.2
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 1.1e-15 87.8 78 53.8
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 3.3e-15 86.3 87 43.7
Pp3c16_16690 Physcomitrium patens HOM05D007171 ORTHO05D008946 7.6e-12 75.1 193 28.5
Mapoly0061s0086 Marchantia polymorpha HOM05D007171 ORTHO05D008946 3.8e-11 72.8 200 25.5
SMO358G0627 Selaginella moellendorffii HOM05D007171 ORTHO05D008946 5.4e-10 68.9 248 25.8
Oeu008469.1 Olea europaea HOM05D007171 ORTHO05D008946 1.3e-08 64.3 76 46.1
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 3.9e-08 62.8 74 45.9


User provided reference genes

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