Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 4.9e-131 471.1 229 100.0
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 1.1e-85 320.5 211 71.1
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.8e-85 319.7 218 72.0
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 3.4e-84 315.5 230 69.1
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 7.7e-84 314.3 230 67.8
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.8e-83 312.0 218 71.1
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.4e-82 310.1 216 68.1
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.6e-81 306.6 214 66.8
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 2.1e-81 306.2 217 67.3
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 4.8e-78 295.0 222 64.4
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 8.2e-78 294.3 226 63.7
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 5.3e-77 291.6 233 63.5
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 7.7e-76 287.7 233 63.9
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 3.2e-74 282.3 208 62.5
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.2e-74 282.0 198 68.2
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 9.4e-74 280.8 218 61.9
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.6e-73 280.0 212 62.3
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 2.1e-73 279.6 247 59.9
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.3e-72 276.2 224 58.0
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 1.1e-71 273.9 218 60.6
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.0e-71 273.1 218 60.1
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.6e-71 272.7 200 64.0
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 3.3e-71 272.3 211 61.6
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 3.3e-71 272.3 215 61.9
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 7.4e-71 271.2 209 63.6
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 9.7e-71 270.8 218 61.5
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.3e-70 270.4 197 64.5
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.3e-70 270.4 222 59.5
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 3.7e-70 268.9 210 59.0
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 6.3e-70 268.1 184 66.8
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 6.3e-70 268.1 212 60.8
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 8.2e-70 267.7 205 61.5
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.8e-69 266.5 225 56.9
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.2e-68 263.8 226 55.8
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.2e-68 263.8 219 58.4
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 2.0e-68 263.1 215 59.5
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 5.9e-68 261.5 215 58.6
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 2.9e-67 259.2 201 61.7
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 3.8e-67 258.8 212 57.5
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 8.5e-67 257.7 214 55.6
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 8.5e-67 257.7 205 63.4
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.5e-66 256.9 193 62.7
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 2.5e-66 256.1 213 58.7
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 3.2e-66 255.8 239 53.6
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 4.2e-66 255.4 226 56.2
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 7.2e-66 254.6 211 58.3
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.2e-65 253.8 214 57.0
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 3.6e-65 252.3 204 60.8
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 3.6e-65 252.3 224 56.2
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 4.7e-65 251.9 206 60.2
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.0e-64 250.8 236 55.1
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.4e-64 250.4 222 58.1
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.8e-64 250.0 193 60.1
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 2.3e-64 249.6 215 56.3
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 6.8e-64 248.1 219 55.7
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 6.8e-64 248.1 197 61.9
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 8.8e-64 247.7 220 55.5
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 8.8e-64 247.7 215 57.2
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 2.6e-63 246.1 214 56.1
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 4.4e-63 245.4 255 50.2
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 5.7e-63 245.0 220 55.0
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 9.7e-63 244.2 208 58.7
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 9.7e-63 244.2 211 57.3
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 2.8e-62 242.7 218 54.1
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 4.8e-62 241.9 213 56.3
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 6.3e-62 241.5 214 55.6
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.4e-61 240.4 223 53.4
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.4e-61 240.4 218 53.7
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.1e-61 239.2 209 56.9
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 4.1e-61 238.8 225 53.8
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.1e-61 238.8 225 53.8
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.1e-61 238.8 225 53.8
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 5.3e-61 238.4 209 57.4
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 5.3e-61 238.4 211 59.7
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 2.0e-60 236.5 214 54.2
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.7e-60 236.1 224 55.4
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.7e-60 236.1 199 60.8
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 3.5e-60 235.7 190 58.4
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 3.5e-60 235.7 217 54.8
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 4.5e-60 235.3 225 55.1
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 7.7e-60 234.6 193 59.1
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.0e-59 234.2 225 53.8
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.3e-59 233.8 213 53.1
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.2e-59 233.0 224 55.4
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 2.9e-59 232.6 208 54.8
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.9e-59 232.6 203 57.6
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.8e-59 232.3 200 57.5
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.8e-59 232.3 202 57.9
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.1e-58 230.7 199 58.8
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.5e-58 230.3 215 54.4
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.9e-58 229.9 206 54.4
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.9e-58 229.9 219 52.5
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.9e-58 229.9 208 54.8
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 4.2e-58 228.8 211 53.1
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 7.2e-58 228.0 199 58.3
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 7.2e-58 228.0 238 50.0
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 1.2e-57 227.3 156 67.3
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.6e-57 226.9 209 56.9
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.6e-57 226.9 209 57.4
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 2.7e-57 226.1 209 56.9
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.7e-57 226.1 193 58.0
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 4.7e-57 225.3 185 61.1
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.7e-57 225.3 219 52.1
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 4.7e-57 225.3 213 53.1
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 6.1e-57 224.9 209 57.4
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 8.0e-57 224.6 217 52.1
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 8.0e-57 224.6 170 66.5
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 1.4e-56 223.8 210 55.7
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.4e-56 223.8 236 51.3
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.3e-56 223.0 209 56.0
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 2.3e-56 223.0 209 56.9
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 4.0e-56 222.2 209 52.6
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.5e-55 220.3 211 55.0
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 2.6e-55 219.5 209 55.5
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.6e-55 219.5 217 51.2
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 5.7e-55 218.4 236 50.0
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.7e-55 218.4 206 51.9
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 9.8e-55 217.6 206 51.5
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.7e-54 216.9 225 52.9
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.7e-54 216.9 198 50.5
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.4e-53 213.8 194 55.7
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 7.0e-53 211.5 264 45.1
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.6e-52 210.3 195 53.3
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.7e-52 209.5 199 51.8
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 1.3e-51 207.2 217 51.2
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 5.0e-51 205.3 138 69.6
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 8.6e-51 204.5 190 50.5
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 2.5e-50 203.0 216 47.7
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 4.2e-50 202.2 192 51.0
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.2e-49 200.7 186 54.8
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 8.0e-49 198.0 215 47.0
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.0e-48 196.1 215 46.0
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.5e-47 193.7 192 52.6
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 1.7e-46 190.3 199 51.8
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 2.8e-46 189.5 209 49.3
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 3.7e-46 189.1 209 49.3
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.4e-45 187.2 226 42.9
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 2.0e-44 183.3 217 45.2
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.0e-44 183.3 207 44.0
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 5.9e-44 181.8 217 44.7
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 5.9e-44 181.8 214 43.5
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.0e-43 178.7 194 47.4
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.0e-43 178.7 182 47.8
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.9e-42 176.8 204 43.6
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 5.6e-42 175.3 208 47.6
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 2.1e-41 173.3 208 47.1
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 4.7e-41 172.2 194 45.9
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.1e-41 171.8 197 43.7
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.1e-41 171.8 197 43.7
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.2e-38 163.3 217 45.2
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 3.7e-38 162.5 193 42.5
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 2.3e-35 153.3 226 38.5
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.6e-34 148.7 135 51.1
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.6e-33 147.1 146 47.9
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.2e-31 141.0 157 48.4
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.2e-29 132.9 156 41.7
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 9.2e-29 131.3 172 39.5
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 3.0e-27 126.3 213 34.7
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 9.5e-26 121.3 142 41.5
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.2e-25 120.9 144 45.8
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 2.8e-25 119.8 214 34.1
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 4.7e-25 119.0 143 44.1
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 2.5e-18 96.7 105 41.9
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.7e-17 92.4 150 33.3
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 2.9e-14 83.2 71 62.0
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.9e-14 82.4 70 54.3
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.2e-13 79.7 68 61.8
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 9.3e-13 78.2 72 51.4
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.0e-11 73.2 52 65.4
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 1.9e-10 70.5 110 34.5
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 1.6e-09 67.4 110 34.5
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 3.6e-09 66.2 58 46.6
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 8.1e-09 65.1 58 46.6
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.0e-07 60.5 64 45.3
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 2.0e-07 60.5 58 43.1
Aa31LG1G22160 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.8e-06 56.2 102 35.3
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 3.8e-06 56.2 69 42.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 4.9e-06 55.8 74 37.8
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 6.4e-06 55.5 75 41.3
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.4e-06 55.1 74 37.8
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 8.4e-06 55.1 75 42.7


User provided reference genes

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