Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.6e-219 765.8 386 100.0
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.7e-160 569.7 312 87.2
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 5.0e-160 568.2 355 79.4
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 1.4e-159 566.6 386 76.7
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 4.2e-159 565.1 389 73.8
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 1.6e-158 563.1 393 73.3
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 3.6e-158 562.0 360 78.9
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 4.6e-158 561.6 299 88.0
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 7.9e-158 560.8 390 74.1
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 1.4e-157 560.1 386 74.4
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.8e-157 559.7 369 77.5
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 2.3e-157 559.3 386 73.1
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 2.3e-157 559.3 386 75.1
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 1.5e-156 556.6 391 73.1
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.0e-156 556.2 369 76.2
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 4.4e-156 555.1 385 74.5
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.3e-155 553.5 367 74.9
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.3e-155 553.5 386 75.4
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 1.7e-155 553.1 390 72.3
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 2.2e-155 552.7 369 76.2
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 3.7e-155 552.0 309 83.8
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.7e-155 552.0 378 73.8
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 4.8e-155 551.6 370 75.9
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 6.3e-155 551.2 329 79.6
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 8.2e-155 550.8 339 78.2
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 8.2e-155 550.8 355 78.0
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.1e-154 550.4 389 71.7
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 3.1e-154 548.9 367 74.7
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 5.3e-154 548.1 327 80.4
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 6.9e-154 547.7 373 75.3
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 9.1e-154 547.4 365 74.2
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 2.0e-153 546.2 374 73.3
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 2.6e-153 545.8 372 77.7
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.0e-152 543.9 385 72.7
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 2.2e-152 542.7 356 74.2
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.9e-152 542.3 386 73.1
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.8e-152 542.0 386 72.5
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 1.9e-151 539.7 386 72.5
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 2.5e-151 539.3 376 74.2
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 3.2e-151 538.9 353 76.2
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 3.2e-151 538.9 367 73.3
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 3.2e-151 538.9 386 71.5
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 4.2e-151 538.5 355 74.9
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.2e-151 537.7 386 71.8
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 7.2e-151 537.7 379 72.8
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 1.2e-150 537.0 379 73.6
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.6e-150 536.6 384 70.8
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 2.1e-150 536.2 346 76.6
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 2.1e-150 536.2 332 78.6
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 3.6e-150 535.4 387 71.8
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 3.6e-150 535.4 367 73.0
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 7.9e-150 534.3 367 73.0
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.4e-149 533.5 338 76.9
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.8e-149 533.1 360 73.1
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 3.0e-149 532.3 376 72.3
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 3.9e-149 531.9 336 76.8
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 5.2e-149 531.6 330 77.9
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 5.2e-149 531.6 357 73.7
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 6.7e-149 531.2 357 73.7
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 6.7e-149 531.2 313 79.6
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 8.8e-149 530.8 335 77.6
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 8.8e-149 530.8 357 74.5
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 8.8e-149 530.8 399 69.9
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 2.0e-148 529.6 373 71.0
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 2.6e-148 529.3 366 71.9
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 5.7e-148 528.1 402 68.4
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 7.4e-148 527.7 373 70.8
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 9.7e-148 527.3 364 72.3
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 9.7e-148 527.3 385 71.4
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.3e-147 526.9 353 73.7
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 2.2e-147 526.2 363 72.7
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 3.7e-147 525.4 362 72.9
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 3.7e-147 525.4 378 69.8
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 4.8e-147 525.0 362 73.2
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.3e-147 524.6 362 72.7
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 8.2e-147 524.2 364 73.6
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 2.4e-146 522.7 386 69.9
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 5.3e-146 521.5 364 73.1
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 5.3e-146 521.5 364 73.1
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 7.0e-146 521.2 354 72.6
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 7.0e-146 521.2 326 74.8
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 9.1e-146 520.8 327 74.0
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 9.1e-146 520.8 357 72.5
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.6e-145 520.0 363 72.7
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 2.6e-145 519.2 359 71.9
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 4.5e-145 518.5 359 71.3
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 5.9e-145 518.1 369 68.8
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 1.0e-144 517.3 366 67.8
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 2.2e-144 516.2 357 71.7
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 2.9e-144 515.8 366 69.4
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 2.9e-144 515.8 326 73.9
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 5.0e-144 515.0 402 69.4
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 6.5e-144 514.6 354 72.0
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.5e-143 513.5 498 58.0
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 3.2e-143 512.3 369 69.1
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 5.5e-143 511.5 386 67.6
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 7.2e-143 511.1 361 71.2
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 9.4e-143 510.8 374 74.1
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 8.0e-142 507.7 314 75.5
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 4.0e-141 505.4 349 70.5
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 2.0e-140 503.1 351 72.1
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 2.0e-140 503.1 309 77.0
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.3e-139 500.4 361 67.9
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 2.8e-139 499.2 325 76.9
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 2.7e-137 492.7 363 69.1
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 3.8e-136 488.8 339 75.2
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.2e-134 483.8 293 74.7
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 5.7e-132 474.9 397 63.2
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 3.5e-129 465.7 288 77.4
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 1.7e-128 463.4 301 76.1
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 5.2e-125 451.8 326 70.6
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 2.4e-122 443.0 289 72.0
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.1e-118 429.9 282 71.3
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 1.7e-115 420.2 380 57.4
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 2.4e-114 416.4 312 64.7
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 3.2e-114 416.0 358 64.0
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 4.3e-111 405.6 330 66.1
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 6.8e-109 398.3 285 67.4
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.4e-108 395.6 244 76.2
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.2e-105 387.5 287 64.1
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 6.0e-105 385.2 304 67.1
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 6.4e-99 365.2 290 60.7
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 2.1e-97 360.1 288 62.5
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 4.3e-95 352.4 276 69.2
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 8.9e-93 344.7 294 57.1
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 6.4e-91 338.6 244 70.1
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 5.4e-90 335.5 320 59.4
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 2.8e-86 323.2 288 58.0
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 1.6e-78 297.4 168 83.3
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 4.2e-74 282.7 153 84.3
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 8.7e-64 248.4 229 55.0
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 2.6e-60 236.9 127 86.6
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 1.6e-57 227.6 126 80.2
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-53 214.9 147 71.4
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.8e-51 206.5 317 44.2
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-47 194.9 147 66.0
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.8e-45 187.6 147 65.3
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.0e-44 184.1 133 65.4
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 3.9e-40 169.9 96 76.0
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 4.4e-39 166.4 147 58.5
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.0e-32 145.2 110 61.8
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.2e-30 137.5 72 88.9
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.2e-20 105.1 57 80.7
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 4.5e-20 103.2 67 71.6
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 4.5e-20 103.2 67 71.6
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 1.7e-19 101.3 128 53.9
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 8.5e-19 99.0 64 73.4
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.3e-14 85.1 45 82.2
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 2.8e-14 84.0 45 82.2
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 4.8e-14 83.2 44 84.1
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 4.1e-13 80.1 41 82.9
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 2.7e-12 77.4 35 91.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 7.2e-10 69.3 40 82.5
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 1.6e-09 68.2 77 46.8
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 2.8e-06 57.4 45 53.3


User provided reference genes

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