Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.7e-112 409.5 218 100.0
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.3e-72 276.9 218 72.0
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.3e-72 276.9 218 72.0
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 2.2e-72 276.2 212 71.7
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.7e-69 266.5 214 65.9
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 8.7e-69 264.2 213 65.7
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.5e-68 262.7 208 74.0
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 4.3e-68 261.9 217 71.4
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 7.3e-68 261.2 215 67.9
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.4e-66 256.9 213 65.3
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.5e-65 253.4 216 64.8
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 9.9e-65 250.8 214 65.4
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.3e-64 250.4 223 70.0
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 2.2e-64 249.6 215 66.0
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.8e-64 248.8 220 65.0
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 4.9e-64 248.4 212 67.0
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 6.4e-64 248.1 213 64.3
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 6.4e-64 248.1 217 65.4
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 8.4e-64 247.7 220 64.1
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 4.2e-63 245.4 210 68.1
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 7.1e-63 244.6 210 67.6
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 9.3e-63 244.2 222 63.5
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 4.6e-62 241.9 215 65.1
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 4.6e-62 241.9 223 61.9
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 7.9e-62 241.1 217 61.3
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.3e-61 240.4 220 65.5
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.3e-61 239.6 224 58.9
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 2.3e-61 239.6 225 64.4
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 3.9e-61 238.8 218 62.4
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 5.1e-61 238.4 213 62.4
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.1e-61 238.4 219 63.5
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.1e-61 238.4 219 63.5
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 6.7e-61 238.0 217 66.4
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 8.7e-61 237.7 221 61.1
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.1e-60 237.3 219 64.4
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.9e-60 236.5 217 62.2
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 3.3e-60 235.7 219 60.3
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.3e-60 235.7 219 63.0
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 3.3e-60 235.7 242 64.0
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.3e-60 235.7 217 62.2
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.3e-60 235.3 204 60.3
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 5.6e-60 235.0 218 62.8
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.3e-59 233.8 221 61.5
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.6e-59 233.4 226 63.7
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 2.1e-59 233.0 216 59.3
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 3.6e-59 232.3 217 59.9
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 3.6e-59 232.3 216 58.8
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.6e-59 232.3 231 60.2
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 3.6e-59 232.3 215 59.5
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 3.6e-59 232.3 219 64.4
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 4.8e-59 231.9 209 66.5
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.8e-59 231.9 190 72.6
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 4.8e-59 231.9 216 63.0
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 8.1e-59 231.1 164 73.2
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.8e-58 229.9 217 59.4
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.8e-58 229.9 217 59.4
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 3.1e-58 229.2 223 63.2
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.1e-58 229.2 218 59.6
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 5.3e-58 228.4 208 65.9
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 6.9e-58 228.0 217 58.5
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 6.9e-58 228.0 214 63.1
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 9.0e-58 227.6 218 59.6
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 9.0e-58 227.6 215 60.9
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 9.0e-58 227.6 215 60.9
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.2e-57 227.3 205 67.3
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 3.4e-57 225.7 211 64.5
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.4e-57 225.7 216 58.3
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.5e-57 225.3 215 61.4
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 5.8e-57 224.9 217 58.1
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.8e-57 224.9 219 60.7
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 7.6e-57 224.6 216 57.9
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.7e-56 223.4 219 60.3
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.7e-56 223.4 216 59.7
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.7e-56 223.4 206 63.6
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.9e-56 222.6 216 57.4
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 2.9e-56 222.6 211 64.0
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.1e-55 220.7 219 61.6
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.4e-55 220.3 226 63.7
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.9e-55 219.9 166 75.3
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 2.4e-55 219.5 217 62.2
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.4e-55 219.5 217 59.9
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 5.5e-55 218.4 214 58.4
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 7.1e-55 218.0 215 56.7
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 7.1e-55 218.0 216 58.3
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.6e-54 216.9 215 56.7
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.6e-54 216.9 217 60.8
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.6e-54 216.9 221 56.6
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.7e-54 216.1 214 58.4
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 4.6e-54 215.3 215 61.4
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 7.9e-54 214.5 228 56.6
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.0e-53 214.2 217 56.7
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-53 213.8 199 61.3
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 3.0e-53 212.6 215 56.3
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 3.9e-53 212.2 216 58.8
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 3.9e-53 212.2 215 56.7
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 6.7e-53 211.5 215 56.7
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.1e-52 210.7 232 53.9
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.9e-52 209.9 221 57.5
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.5e-52 209.5 220 56.4
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 7.4e-52 208.0 217 55.3
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.3e-51 207.2 220 58.2
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 6.2e-51 204.9 215 58.1
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 8.1e-51 204.5 219 55.3
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.7e-48 196.8 208 61.1
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.9e-48 196.1 198 61.6
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.9e-48 196.1 184 59.2
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 3.2e-47 192.6 220 53.6
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 3.0e-45 186.0 222 51.8
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 6.7e-45 184.9 221 52.9
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.1e-44 184.1 209 50.2
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 7.4e-44 181.4 215 50.2
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 9.6e-44 181.0 156 68.6
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 2.8e-43 179.5 228 48.7
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.3e-40 170.6 189 52.9
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.4e-39 167.2 198 52.5
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.3e-37 160.6 220 50.5
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.1e-36 157.5 191 49.2
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.1e-36 157.5 189 51.9
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.1e-36 157.5 212 46.7
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 4.3e-36 155.6 148 56.8
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 9.7e-36 154.5 146 68.5
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.4e-34 150.6 136 61.0
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.4e-34 149.8 214 39.3
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 4.1e-34 149.1 223 47.1
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 3.4e-33 146.0 213 39.4
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 7.7e-33 144.8 202 44.6
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 3.8e-32 142.5 121 60.3
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 6.5e-32 141.7 224 41.5
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.4e-31 140.6 209 42.1
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.5e-31 138.7 202 42.1
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.1e-30 136.7 216 41.2
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 6.1e-30 135.2 153 44.4
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.4e-29 134.0 212 42.5
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 3.9e-29 132.5 105 64.8
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.0e-28 130.2 95 64.2
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 5.3e-26 122.1 197 43.1
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 5.3e-26 122.1 145 42.1
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.3e-24 117.5 93 52.7
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 5.0e-24 115.5 133 57.1
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.9e-23 113.6 133 56.4
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.2e-23 112.8 140 43.6
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.2e-22 110.9 82 56.1
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 4.7e-22 109.0 216 34.3
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 7.9e-22 108.2 201 46.8
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 3.9e-21 105.9 84 51.2
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 4.4e-20 102.4 83 54.2
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.1e-18 96.3 84 46.4
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 7.0e-18 95.1 106 40.6
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 1.2e-17 94.4 116 54.3
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.5e-17 92.8 88 48.9
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.0e-16 91.3 114 54.4
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 6.5e-16 88.6 100 53.0
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 6.5e-16 88.6 105 43.8
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 1.6e-14 84.0 177 38.4
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.0e-13 81.3 112 44.6
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 9.7e-12 74.7 80 51.2
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 3.7e-11 72.8 77 51.9
Ah.00g000610 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.9e-07 60.5 83 43.4
AT4G18692 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 3.6e-06 56.2 70 50.0
Oeu041536.1 Olea europaea HOM05D004429 ORTHO05D288779 6.1e-06 55.5 44 56.8
AT3G53342 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 8.0e-06 55.1 70 50.0


User provided reference genes

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