Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 4.0e-53 211.1 101 100.0
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 2.2e-30 135.6 95 66.3
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 3.7e-30 134.8 94 62.8
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 4.8e-30 134.4 91 67.0
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.8e-29 132.5 98 61.2
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 7.7e-28 127.1 87 62.1
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 1.0e-27 126.7 82 67.1
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 1.7e-27 125.9 91 62.6
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 5.0e-27 124.4 96 59.4
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 1.1e-26 123.2 86 61.6
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 1.1e-26 123.2 86 61.6
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 1.4e-26 122.9 100 56.0
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 1.9e-26 122.5 105 57.1
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 1.9e-26 122.5 88 60.2
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 3.2e-26 121.7 97 56.7
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 7.2e-26 120.6 101 56.4
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 1.2e-25 119.8 101 58.4
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.6e-25 119.4 97 60.8
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 1.6e-25 119.4 94 59.6
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 1.6e-25 119.4 94 59.6
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 1.6e-25 119.4 102 56.9
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 2.7e-25 118.6 95 57.9
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 4.6e-25 117.9 88 58.0
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 6.1e-25 117.5 104 54.8
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 7.9e-25 117.1 88 58.0
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.0e-24 116.7 85 61.2
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 1.4e-24 116.3 76 64.5
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 2.3e-24 115.5 97 55.7
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.3e-24 115.5 86 61.6
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 3.0e-24 115.2 91 58.2
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 3.9e-24 114.8 91 57.1
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 3.9e-24 114.8 75 64.0
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 6.7e-24 114.0 82 57.3
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 8.8e-24 113.6 99 52.5
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 1.1e-23 113.2 94 56.4
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 1.1e-23 113.2 96 51.0
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.5e-23 112.1 94 56.4
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 2.5e-23 112.1 80 63.8
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.5e-23 112.1 98 54.1
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 2.5e-23 112.1 97 56.7
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 5.7e-23 110.9 83 61.4
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 9.7e-23 110.2 83 63.9
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 9.7e-23 110.2 97 54.6
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.3e-22 109.8 82 58.5
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.3e-22 109.8 102 53.9
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 2.2e-22 109.0 77 61.0
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 2.8e-22 108.6 101 56.4
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 2.8e-22 108.6 77 59.7
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 2.8e-22 108.6 97 52.6
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 6.3e-22 107.5 102 53.9
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 8.2e-22 107.1 74 58.1
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 1.4e-21 106.3 85 55.3
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 4.1e-21 104.8 101 47.5
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 4.1e-21 104.8 101 47.5
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 4.1e-21 104.8 87 52.9
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 5.3e-21 104.4 93 49.5
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 5.3e-21 104.4 100 51.0
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 5.3e-21 104.4 88 51.1
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 6.9e-21 104.0 88 51.1
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 9.1e-21 103.6 106 53.8
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 1.5e-20 102.8 101 49.5
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 2.6e-20 102.1 96 52.1
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 7.7e-20 100.5 100 51.0
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 1.3e-19 99.8 97 48.5
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.3e-19 99.8 97 48.5
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 1.7e-19 99.4 97 51.5
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.9e-19 98.6 90 52.2
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 3.8e-19 98.2 99 51.5
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 8.5e-19 97.1 96 50.0
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.1e-18 96.7 93 44.1
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.1e-18 96.7 93 44.1
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 1.1e-18 96.7 93 52.7
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 1.9e-18 95.9 93 48.4
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 1.9e-18 95.9 97 50.5
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 1.9e-18 95.9 99 51.5
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 2.5e-18 95.5 93 47.3
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.5e-18 95.5 89 50.6
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.5e-18 95.5 94 47.9
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 2.5e-18 95.5 97 49.5
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.2e-18 95.1 89 50.6
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 4.2e-18 94.7 85 47.1
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 4.2e-18 94.7 89 50.6
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 5.5e-18 94.4 94 45.7
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 9.4e-18 93.6 85 47.1
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 9.4e-18 93.6 94 46.8
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 9.4e-18 93.6 86 50.0
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 1.2e-17 93.2 97 50.5
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 1.6e-17 92.8 83 47.0
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 1.6e-17 92.8 85 47.1
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 1.6e-17 92.8 85 45.9
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 2.1e-17 92.4 94 47.9
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 2.1e-17 92.4 79 53.2
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 4.7e-17 91.3 93 46.2
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 4.7e-17 91.3 100 47.0
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 6.1e-17 90.9 94 46.8
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 1.0e-16 90.1 94 46.8
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 1.0e-16 90.1 97 46.4
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.4e-16 89.7 104 44.2
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 1.8e-16 89.4 67 59.7
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 1.8e-16 89.4 84 53.6
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 1.8e-16 89.4 98 48.0
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 2.3e-16 89.0 98 48.0
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 5.1e-16 87.8 82 51.2
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 6.7e-16 87.4 86 45.3
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 8.8e-16 87.0 86 45.3
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 1.1e-15 86.7 77 48.1
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 1.5e-15 86.3 98 43.9
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.6e-15 85.5 95 48.4
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 4.4e-15 84.7 95 46.3
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.4e-15 84.7 80 50.0
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.4e-15 84.7 80 50.0
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 5.7e-15 84.3 95 44.2
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 7.4e-15 84.0 88 45.5
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 1.3e-14 83.2 88 45.5
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 1.7e-14 82.8 77 51.9
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 2.8e-14 82.0 93 47.3
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 1.1e-13 80.1 85 44.7
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 1.1e-13 80.1 79 46.8
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 1.1e-13 80.1 90 45.6
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.4e-13 79.7 95 45.3
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 1.4e-13 79.7 80 43.8
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 2.4e-13 79.0 80 47.5
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 5.3e-13 77.8 90 46.7
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 5.3e-13 77.8 99 44.4
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 5.3e-13 77.8 99 40.4
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 7.0e-13 77.4 95 45.3
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 9.1e-13 77.0 100 45.0
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 9.1e-13 77.0 80 45.0
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 9.1e-13 77.0 84 48.8
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 9.1e-13 77.0 80 48.8
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 9.1e-13 77.0 80 45.0
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 9.1e-13 77.0 98 38.8
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 2.0e-12 75.9 95 43.2
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 2.6e-12 75.5 80 43.8
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 2.6e-12 75.5 93 39.8
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.6e-12 75.5 80 46.2
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 2.6e-12 75.5 80 47.5
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 2.6e-12 75.5 77 45.5
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 3.5e-12 75.1 80 43.8
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 3.5e-12 75.1 80 46.2
arahy.Tifrunner.gnm1.ann1.SHBY5H Arachis hypogaea HOM05D003174 ORTHO05D003439 4.5e-12 74.7 51 64.7
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 4.5e-12 74.7 80 46.2
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 4.5e-12 74.7 80 46.2
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 4.5e-12 74.7 74 44.6
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 5.9e-12 74.3 97 41.2
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.9e-12 74.3 99 42.4
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 5.9e-12 74.3 95 42.1
arahy.Tifrunner.gnm1.ann1.QHLS1J Arachis hypogaea HOM05D003174 ORTHO05D003439 7.7e-12 73.9 87 44.8
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 1.0e-11 73.6 98 37.8
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.3e-11 73.2 80 45.0
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 1.3e-11 73.2 92 44.6
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 1.3e-11 73.2 98 41.8
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 1.3e-11 73.2 98 41.8
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 1.3e-11 73.2 88 44.3
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 1.7e-11 72.8 80 41.2
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.7e-11 72.8 99 41.4
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 1.7e-11 72.8 48 64.6
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 2.9e-11 72.0 95 37.9
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 3.8e-11 71.6 80 42.5
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 3.8e-11 71.6 97 42.3
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 3.8e-11 71.6 143 29.4
arahy.Tifrunner.gnm1.ann1.4Q6X4E Arachis hypogaea HOM05D003174 ORTHO05D003439 1.1e-10 70.1 51 56.9
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 4.2e-10 68.2 107 39.3
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 4.2e-10 68.2 47 61.7
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 5.5e-10 67.8 107 39.3
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 9.4e-10 67.0 96 36.5
FAN09G4560 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.1e-09 65.9 52 55.8
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 2.7e-09 65.5 79 43.0
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 4.7e-09 64.7 47 66.0
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 1.0e-08 63.5 96 37.5
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 1.0e-08 63.5 45 57.8
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 1.4e-08 63.2 79 39.2
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 1.8e-08 62.8 100 35.0
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 1.8e-08 62.8 104 33.7
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 1.8e-08 62.8 93 39.8
ATR0019G037 Amborella trichopoda HOM05D003174 ORTHO05D003439 3.0e-08 62.0 87 35.6
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 1.1e-07 60.1 109 33.9
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 1.1e-07 60.1 89 36.0
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 1.1e-07 60.1 94 38.3
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 1.5e-07 59.7 47 55.3
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 2.6e-07 58.9 46 54.3
Os01g0530300 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 3.3e-07 58.5 83 41.0
TPR.G22580 Trifolium pratense HOM05D003174 ORTHO05D003439 7.5e-07 57.4 96 37.5
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 1.7e-06 56.2 101 29.7
Glyma.09G003000 Glycine max HOM05D003174 ORTHO05D003439 3.7e-06 55.1 78 35.9


User provided reference genes

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