Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g02710 Coffea canephora HOM05D006626 ORTHO05D007352 6.8e-173 610.5 300 100.0
CSS0017232 Camellia sinensis var. sinensis HOM05D006626 ORTHO05D007352 2.7e-97 359.4 318 65.1
Lj2A96T66 Lonicera japonica HOM05D006626 ORTHO05D007352 3.0e-96 355.9 305 66.9
PGSC0003DMG400008843 Solanum tuberosum HOM05D006626 ORTHO05D007352 7.4e-95 351.3 310 61.9
vmacro20144 Vaccinium macrocarpon HOM05D006626 ORTHO05D007352 8.2e-94 347.8 315 64.8
TAR623G1666 Trochodendron aralioides HOM05D006626 ORTHO05D007352 6.9e-93 344.7 308 63.3
Solyc09g010710.4 Solanum lycopersicum HOM05D006626 ORTHO05D007352 1.2e-92 344.0 309 61.5
Sopen09g005420 Solanum pennellii HOM05D006626 ORTHO05D007352 1.2e-92 344.0 310 61.3
GSVIVG01034185001 Vitis vinifera HOM05D006626 ORTHO05D007352 3.8e-91 339.0 311 63.0
Nn2g10382 Nelumbo nucifera HOM05D006626 ORTHO05D007352 1.2e-89 334.0 309 62.8
MSTRG.19088 Avicennia marina HOM05D006626 ORTHO05D007352 5.1e-88 328.6 297 62.3
QL07p048128 Quercus lobata HOM05D006626 ORTHO05D007352 1.1e-87 327.4 296 62.8
CANSAT35G0626 Cannabis sativa HOM05D006626 ORTHO05D007352 2.8e-86 322.8 310 61.9
CiPaw.09G191700 Carya illinoinensis HOM05D006626 ORTHO05D007352 2.8e-86 322.8 315 61.3
Migut.J00335 Erythranthe guttata HOM05D006626 ORTHO05D007352 1.4e-85 320.5 291 59.5
Gohir.A09G156700 Gossypium hirsutum HOM05D006626 ORTHO05D007352 1.2e-84 317.4 310 61.0
Thecc.05G040800 Theobroma cacao HOM05D006626 ORTHO05D007352 1.6e-84 317.0 296 62.8
Gohir.D09G152000 Gossypium hirsutum HOM05D006626 ORTHO05D007352 2.0e-84 316.6 310 61.0
Gorai.006G173400 Gossypium raimondii HOM05D006626 ORTHO05D007352 2.0e-84 316.6 310 61.0
Duzib093G0902 Durio zibethinus HOM05D006626 ORTHO05D007352 4.5e-84 315.5 312 60.9
COL.COLO4_14816 Corchorus olitorius HOM05D006626 ORTHO05D007352 7.7e-84 314.7 300 60.3
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.3e-83 313.9 313 57.8
Ciclev10012389m.g Citrus clementina HOM05D006626 ORTHO05D007352 1.7e-83 313.5 309 60.5
Actinidia26461 Actinidia chinensis HOM05D006626 ORTHO05D007352 2.2e-83 313.2 307 61.2
SGA_v2.0_scaffold126G33791 Striga asiatica HOM05D006626 ORTHO05D007352 2.2e-83 313.2 302 59.6
Sed0005156 Sechium edule HOM05D006626 ORTHO05D007352 1.1e-82 310.8 300 61.3
Atru.chr8.1962 Acer truncatum HOM05D006626 ORTHO05D007352 1.5e-82 310.5 302 58.6
PGR004G1893 Punica granatum HOM05D006626 ORTHO05D007352 3.2e-82 309.3 316 60.1
Oeu049236.1 Olea europaea HOM05D006626 ORTHO05D007352 7.2e-82 308.1 280 63.9
MD12G1140400 Malus domestica HOM05D006626 ORTHO05D007352 1.6e-81 307.0 313 57.2
Sc20g0004680 Simmondsia chinensis HOM05D006626 ORTHO05D007352 1.6e-81 307.0 310 58.7
CAN.G326.19 Capsicum annuum HOM05D006626 ORTHO05D007352 6.1e-81 305.1 271 60.5
MD04G1127200 Malus domestica HOM05D006626 ORTHO05D007352 8.0e-81 304.7 315 57.5
Medtr7g060340 Medicago truncatula HOM05D006626 ORTHO05D007352 1.4e-80 303.9 304 55.3
RcHm_v2.0_Chr3g0466791 Rosa chinensis HOM05D006626 ORTHO05D007352 8.8e-80 301.2 293 59.7
FvH4_6g13970 Fragaria vesca HOM05D006626 ORTHO05D007352 1.5e-79 300.4 295 59.7
Aqoxy4G02911 Aquilegia oxysepala HOM05D006626 ORTHO05D007352 4.4e-79 298.9 321 53.9
Glyma.08G358600 Glycine max HOM05D006626 ORTHO05D007352 4.4e-79 298.9 287 59.6
Rhsim05G0191600 Rhododendron simsii HOM05D006626 ORTHO05D007352 4.4e-79 298.9 303 59.7
FAN14G0594 Fragaria x ananassa HOM05D006626 ORTHO05D007352 5.7e-79 298.5 295 59.7
TWI74G0730 Tripterygium wilfordii HOM05D006626 ORTHO05D007352 9.7e-79 297.7 291 57.7
FAN02G1739 Fragaria x ananassa HOM05D006626 ORTHO05D007352 1.7e-78 297.0 295 59.3
Manes.09G089800 Manihot esculenta HOM05D006626 ORTHO05D007352 8.2e-78 294.7 294 58.2
CsaV3_3G034930 Cucumis sativus L. HOM05D006626 ORTHO05D007352 3.1e-77 292.7 301 57.5
HanXRQChr04g0124851 Helianthus annuus HOM05D006626 ORTHO05D007352 4.1e-77 292.4 295 58.0
FAN05G2294 Fragaria x ananassa HOM05D006626 ORTHO05D007352 5.3e-77 292.0 292 58.2
FAN09G4835 Fragaria x ananassa HOM05D006626 ORTHO05D007352 5.3e-77 292.0 292 58.2
arahy.Tifrunner.gnm1.ann1.BMK4YH Arachis hypogaea HOM05D006626 ORTHO05D007352 1.2e-76 290.8 302 57.0
Phvul.008G100000 Phaseolus vulgaris HOM05D006626 ORTHO05D007352 1.2e-76 290.8 289 57.8
Peaxi162Scf00165g01519 Petunia axillaris HOM05D006626 ORTHO05D007352 1.6e-76 290.4 310 57.4
arahy.Tifrunner.gnm1.ann1.DD5A1S Arachis hypogaea HOM05D006626 ORTHO05D007352 3.5e-76 289.3 302 57.0
Lalb_Chr19g0125411 Lupinus albus HOM05D006626 ORTHO05D007352 3.5e-76 289.3 298 58.1
MBI14_g37824_MAGBIO Magnolia biondii HOM05D006626 ORTHO05D007352 7.7e-76 288.1 300 56.3
Lj1g0010963 Lotus japonicus HOM05D006626 ORTHO05D007352 1.0e-75 287.7 320 54.4
MELO3C009261.2 Cucumis melo HOM05D006626 ORTHO05D007352 1.9e-74 283.5 301 55.5
THA.LOC104816277 Tarenaya hassleriana HOM05D006626 ORTHO05D007352 4.2e-74 282.3 327 56.3
CDE09G1242 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 5.5e-74 282.0 298 56.0
Ca_11335_v3 Cicer arietinum L. HOM05D006626 ORTHO05D007352 2.7e-73 279.6 290 55.9
Nitab4.5_0003552g0020 Nicotiana tabacum HOM05D006626 ORTHO05D007352 4.7e-73 278.9 294 54.1
ECA236G0397 Erigeron canadensis HOM05D006626 ORTHO05D007352 1.4e-72 277.3 300 54.3
Ah.08g212230 Amaranthus hybridus HOM05D006626 ORTHO05D007352 3.0e-72 276.2 305 53.8
AT3G09430 Arabidopsis thaliana HOM05D006626 ORTHO05D007352 5.2e-72 275.4 292 56.5
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.8e-72 275.0 282 58.5
PSO339G0986 Papaver somniferum HOM05D006626 ORTHO05D007352 6.8e-72 275.0 344 50.9
Carub.0003s0853 Capsella rubella HOM05D006626 ORTHO05D007352 1.2e-71 274.2 295 56.3
PSO384G0023 Papaver somniferum HOM05D006626 ORTHO05D007352 5.7e-71 271.9 338 51.2
AL3G20610 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 7.5e-71 271.6 290 56.2
Nitab4.5_0005449g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 7.5e-71 271.6 295 54.9
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 9.8e-71 271.2 294 56.8
CARHR083840 Cardamine hirsuta HOM05D006626 ORTHO05D007352 1.3e-70 270.8 300 54.3
Thhalv10021243m.g Eutrema salsugineum HOM05D006626 ORTHO05D007352 1.8e-69 266.9 294 54.8
Sp3g07800 Schrenkiella parvula HOM05D006626 ORTHO05D007352 1.8e-69 266.9 299 53.8
VMungo1383G0921 Vigna mungo HOM05D006626 ORTHO05D007352 3.5e-68 262.7 277 56.7
Peaxi162Scf00710g00212 Petunia axillaris HOM05D006626 ORTHO05D007352 2.9e-67 259.6 245 59.2
ATR0559G191 Amborella trichopoda HOM05D006626 ORTHO05D007352 3.8e-67 259.2 312 51.9
Potri.006G084500 Populus trichocarpa HOM05D006626 ORTHO05D007352 1.1e-66 257.7 288 56.6
Aa31LG3G1920 Aethionema arabicum HOM05D006626 ORTHO05D007352 2.5e-66 256.5 305 51.5
Aa31sc277G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 3.2e-66 256.1 301 52.5
SHI12668 Sapria himalayana HOM05D006626 ORTHO05D007352 3.0e-64 249.6 295 53.6
EL10Ac7g17297 Beta vulgaris HOM05D006626 ORTHO05D007352 2.4e-61 240.0 284 50.7
A05p39550 Brassica napus HOM05D006626 ORTHO05D007352 4.1e-61 239.2 333 45.9
BraA05t22736Z Brassica rapa HOM05D006626 ORTHO05D007352 5.4e-61 238.8 293 50.9
BcaC05g29673 Brassica carinata HOM05D006626 ORTHO05D007352 7.7e-60 235.0 356 44.9
BolC5t34508H Brassica oleracea HOM05D006626 ORTHO05D007352 1.0e-59 234.6 362 45.9
C05p58580 Brassica napus HOM05D006626 ORTHO05D007352 1.7e-59 233.8 130 81.5
Lsat_1_v5_gn_8_82780 Lactuca sativa HOM05D006626 ORTHO05D007352 2.9e-59 233.0 325 49.8
Eucgr.K03142 Eucalyptus grandis HOM05D006626 ORTHO05D007352 1.5e-55 220.7 145 73.1
ClCG10G021100 Citrullus lanatus HOM05D006626 ORTHO05D007352 1.1e-53 214.5 301 48.2
AUR62040984 Chenopodium quinoa HOM05D006626 ORTHO05D007352 2.5e-50 203.4 109 83.5
Prupe.6G253700 Prunus persica HOM05D006626 ORTHO05D007352 3.3e-50 203.0 256 50.8
Zm00001eb105220 Zea mays HOM05D006626 ORTHO05D007352 4.7e-49 199.1 286 46.2
HPP92_012592 Vanilla planifolia HOM05D006626 ORTHO05D007352 4.0e-48 196.1 111 80.2
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 5.2e-48 195.7 109 82.6
Os07g0695700 Oryza sativa ssp. japonica HOM05D006626 ORTHO05D007352 2.6e-47 193.4 275 44.4
Mapoly0001s0170 Marchantia polymorpha HOM05D006626 ORTHO05D007352 6.4e-46 188.7 120 73.3
AUR62042106 Chenopodium quinoa HOM05D006626 ORTHO05D007352 8.6e-43 178.3 98 82.7
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.6e-41 174.1 98 82.7
Hund12078 Selenicereus undatus HOM05D006626 ORTHO05D007352 6.2e-41 172.2 94 84.0
AagrBONN_evm.TU.Sc2ySwM_362.1793 Anthoceros agrestis HOM05D006626 ORTHO05D007352 8.1e-41 171.8 205 46.8
Dinv35614 Davidia involucrata HOM05D006626 ORTHO05D007352 2.3e-40 170.2 218 53.7
QL01p055053 Quercus lobata HOM05D006626 ORTHO05D007352 4.0e-40 169.5 98 79.6
CBR_g84850 Chara braunii HOM05D006626 ORTHO05D007352 8.9e-40 168.3 139 59.0
QL93p0107_0195 Quercus lobata HOM05D006626 ORTHO05D007352 1.1e-34 151.4 126 64.3
Atru.chr11.672 Acer truncatum HOM05D006626 ORTHO05D007352 3.3e-34 149.8 98 73.5
SEGI_14743 Sequoiadendron giganteum HOM05D006626 ORTHO05D007352 4.3e-34 149.4 98 70.4
Nitab4.5_0027058g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.6e-33 147.5 193 49.2
Cpa.g.sc188.15 Carica papaya HOM05D006626 ORTHO05D007352 7.1e-29 132.1 216 45.4
Haze_20773 Corylus avellana HOM05D003752 ORTHO05D004537 1.7e-27 127.5 198 48.0
Psat3g141480 Pisum sativum HOM05D006626 ORTHO05D007352 1.5e-23 114.4 202 45.5
AL614U10010 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 6.4e-22 109.0 202 44.1
AUR62042107 Chenopodium quinoa HOM05D006626 ORTHO05D007352 7.6e-15 85.5 190 40.5
MD02G1131100 Malus domestica HOM05D006626 ORTHO05D007352 7.6e-15 85.5 98 54.1
MD05G1218700 Malus domestica HOM05D006626 ORTHO05D007352 1.3e-14 84.7 104 45.2
MD16G1182100 Malus domestica HOM05D006626 ORTHO05D007352 1.3e-14 84.7 104 45.2
MD15G1437500 Malus domestica HOM05D006626 ORTHO05D007352 2.9e-14 83.6 104 44.2
SGA_v2.0_scaffold18G08259 Striga asiatica HOM05D006626 ORTHO05D007352 1.9e-13 80.9 82 53.7
QL01p053860 Quercus lobata HOM05D006626 ORTHO05D007352 2.1e-12 77.4 41 85.4
CDE02G2228 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 4.6e-12 76.3 135 38.5
AUR62040983 Chenopodium quinoa HOM05D006626 ORTHO05D007352 8.7e-11 72.0 195 36.4
Aa31sc161G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 1.8e-08 64.3 191 35.6
TAR633G2221 Trochodendron aralioides HOM05D006626 ORTHO05D007352 2.4e-08 63.9 44 63.6
arahy.Tifrunner.gnm1.ann1.9RDP1W Arachis hypogaea HOM05D003961 ORTHO05D007352 1.7e-06 57.8 131 36.6
SMO230G0120 Selaginella moellendorffii HOM05D040121 ORTHO05D007352 2.2e-06 57.4 204 27.9


User provided reference genes

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